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Cluster: HRGMv2_0885_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0885_17 HRGMv2_0885_17_11 14840 17290 - 4.A.1.1.8
TF HRGMv2_0885_17 HRGMv2_0885_17_12 17520 18239 + GntR
TC HRGMv2_0885_17 HRGMv2_0885_17_13 18546 19862 + 3.A.1.1.45
TC HRGMv2_0885_17 HRGMv2_0885_17_14 19950 20804 + 3.A.1.1.45
TC HRGMv2_0885_17 HRGMv2_0885_17_15 20804 21643 + 3.A.1.1.45
TC HRGMv2_0885_17 HRGMv2_0885_17_16 21712 22911 + 3.A.1.1.22
CAZyme HRGMv2_0885_17 HRGMv2_0885_17_17 23285 25552 - GT35
CAZyme HRGMv2_0885_17 HRGMv2_0885_17_18 25681 27186 - GH77
Gene ID: HRGMv2_0885_17_11
Type: TC
Location: 14840 - 17290 (-)
Gene ID: HRGMv2_0885_17_12
Type: TF
Location: 17520 - 18239 (+)
Gene ID: HRGMv2_0885_17_13
Type: TC
Location: 18546 - 19862 (+)
Gene ID: HRGMv2_0885_17_14
Type: TC
Location: 19950 - 20804 (+)
Gene ID: HRGMv2_0885_17_15
Type: TC
Location: 20804 - 21643 (+)
Gene ID: HRGMv2_0885_17_16
Type: TC
Location: 21712 - 22911 (+)
Gene ID: HRGMv2_0885_17_17
Type: CAZyme
Location: 23285 - 25552 (-)
Gene ID: HRGMv2_0885_17_18
Type: CAZyme
Location: 25681 - 27186 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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