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Cluster: HRGMv2_0885_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0885_15 HRGMv2_0885_15_28 32880 34049 - CE9
STP HRGMv2_0885_15 HRGMv2_0885_15_29 34167 35333 - SIS | SIS
TF HRGMv2_0885_15 HRGMv2_0885_15_30 35448 36179 - GntR
TC HRGMv2_0885_15 HRGMv2_0885_15_31 36364 37446 - 4.A.6.1.4
TC HRGMv2_0885_15 HRGMv2_0885_15_32 37436 38236 - 4.A.6.1.4
TC HRGMv2_0885_15 HRGMv2_0885_15_33 38327 38809 - 4.A.6.1.4
pfam HRGMv2_0885_15 HRGMv2_0885_15_34 38846 39127 - YajC
TC HRGMv2_0885_15 HRGMv2_0885_15_35 39127 39570 - 4.A.6.1.16
Gene ID: HRGMv2_0885_15_28
Type: CAZyme
Location: 32880 - 34049 (-)
Gene ID: HRGMv2_0885_15_29
Type: STP
Location: 34167 - 35333 (-)
Gene ID: HRGMv2_0885_15_30
Type: TF
Location: 35448 - 36179 (-)
Gene ID: HRGMv2_0885_15_31
Type: TC
Location: 36364 - 37446 (-)
Gene ID: HRGMv2_0885_15_32
Type: TC
Location: 37436 - 38236 (-)
Gene ID: HRGMv2_0885_15_33
Type: TC
Location: 38327 - 38809 (-)
Gene ID: HRGMv2_0885_15_34
Type: pfam
Location: 38846 - 39127 (-)
Gene ID: HRGMv2_0885_15_35
Type: TC
Location: 39127 - 39570 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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