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Cluster: HRGMv2_0885_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0885_15 HRGMv2_0885_15_6 5225 5563 - 4.A.3.1.2
TF HRGMv2_0885_15 HRGMv2_0885_15_7 5778 6782 - LacI
TC HRGMv2_0885_15 HRGMv2_0885_15_8 7140 8915 + 4.A.3.1.1
CAZyme HRGMv2_0885_15 HRGMv2_0885_15_9 8982 10421 + GH1
TF HRGMv2_0885_15 HRGMv2_0885_15_10 10689 11726 - LacI
CAZyme HRGMv2_0885_15 HRGMv2_0885_15_11 12068 13510 + GH1
TC HRGMv2_0885_15 HRGMv2_0885_15_12 13687 15447 + 4.A.3.1.1
TF HRGMv2_0885_15 HRGMv2_0885_15_13 15705 16715 - LacI
TC HRGMv2_0885_15 HRGMv2_0885_15_14 16991 18769 + 4.A.3.1.1
CAZyme HRGMv2_0885_15 HRGMv2_0885_15_15 18845 20266 + GH1
pfam HRGMv2_0885_15 HRGMv2_0885_15_16 20628 21860 + Fic
STP HRGMv2_0885_15 HRGMv2_0885_15_17 21898 22239 - DeoRC
TC HRGMv2_0885_15 HRGMv2_0885_15_18 22402 24096 - 4.A.3.1.1
Gene ID: HRGMv2_0885_15_6
Type: TC
Location: 5225 - 5563 (-)
Gene ID: HRGMv2_0885_15_7
Type: TF
Location: 5778 - 6782 (-)
Gene ID: HRGMv2_0885_15_8
Type: TC
Location: 7140 - 8915 (+)
Gene ID: HRGMv2_0885_15_9
Type: CAZyme
Location: 8982 - 10421 (+)
Gene ID: HRGMv2_0885_15_10
Type: TF
Location: 10689 - 11726 (-)
Gene ID: HRGMv2_0885_15_11
Type: CAZyme
Location: 12068 - 13510 (+)
Gene ID: HRGMv2_0885_15_12
Type: TC
Location: 13687 - 15447 (+)
Gene ID: HRGMv2_0885_15_13
Type: TF
Location: 15705 - 16715 (-)
Gene ID: HRGMv2_0885_15_14
Type: TC
Location: 16991 - 18769 (+)
Gene ID: HRGMv2_0885_15_15
Type: CAZyme
Location: 18845 - 20266 (+)
Gene ID: HRGMv2_0885_15_16
Type: pfam
Location: 20628 - 21860 (+)
Gene ID: HRGMv2_0885_15_17
Type: STP
Location: 21898 - 22239 (-)
Gene ID: HRGMv2_0885_15_18
Type: TC
Location: 22402 - 24096 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0885_15_10 vegetarian > omnivore 1.07770 0.02242

🧭 Explore Read Mapping of CGC

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