dbCAN Logo

Cluster: HRGMv2_0884_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0884_4 HRGMv2_0884_4_50 54134 54577 + 4.A.6.1.16
pfam HRGMv2_0884_4 HRGMv2_0884_4_51 54577 54858 + YajC
TC HRGMv2_0884_4 HRGMv2_0884_4_52 54895 55377 + 4.A.6.1.4
TC HRGMv2_0884_4 HRGMv2_0884_4_53 55468 56268 + 4.A.6.1.4
TC HRGMv2_0884_4 HRGMv2_0884_4_54 56258 57340 + 4.A.6.1.4
TF HRGMv2_0884_4 HRGMv2_0884_4_55 57526 58257 + GntR
STP HRGMv2_0884_4 HRGMv2_0884_4_56 58372 59538 + SIS | SIS
CAZyme HRGMv2_0884_4 HRGMv2_0884_4_57 59657 60826 + CE9
Gene ID: HRGMv2_0884_4_50
Type: TC
Location: 54134 - 54577 (+)
Gene ID: HRGMv2_0884_4_51
Type: pfam
Location: 54577 - 54858 (+)
Gene ID: HRGMv2_0884_4_52
Type: TC
Location: 54895 - 55377 (+)
Gene ID: HRGMv2_0884_4_53
Type: TC
Location: 55468 - 56268 (+)
Gene ID: HRGMv2_0884_4_54
Type: TC
Location: 56258 - 57340 (+)
Gene ID: HRGMv2_0884_4_55
Type: TF
Location: 57526 - 58257 (+)
Gene ID: HRGMv2_0884_4_56
Type: STP
Location: 58372 - 59538 (+)
Gene ID: HRGMv2_0884_4_57
Type: CAZyme
Location: 59657 - 60826 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List