dbCAN Logo

Cluster: HRGMv2_0880_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0880_4 HRGMv2_0880_4_52 54656 55450 - 3.A.1.34.1
TC HRGMv2_0880_4 HRGMv2_0880_4_53 55443 56366 - 3.A.1.34.1
TC HRGMv2_0880_4 HRGMv2_0880_4_54 56571 57551 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0880_4 HRGMv2_0880_4_55 57711 58499 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0880_4 HRGMv2_0880_4_56 58748 60151 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0880_4 HRGMv2_0880_4_57 60287 62221 - 9.B.97.5.1
TC HRGMv2_0880_4 HRGMv2_0880_4_58 62456 63019 - 4.A.1.2.6
peptidase HRGMv2_0880_4 HRGMv2_0880_4_59 63266 64165 + S09.UPW
NULL(UNKNOWN) HRGMv2_0880_4 HRGMv2_0880_4_60 64213 64533 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0880_4 HRGMv2_0880_4_61 64655 67015 + 9.A.8.1.6
TC HRGMv2_0880_4 HRGMv2_0880_4_62 67139 68335 + 2.A.1.2.18
CAZyme HRGMv2_0880_4 HRGMv2_0880_4_63 68489 69865 + GH13_20
Gene ID: HRGMv2_0880_4_52
Type: TC
Location: 54656 - 55450 (-)
Gene ID: HRGMv2_0880_4_53
Type: TC
Location: 55443 - 56366 (-)
Gene ID: HRGMv2_0880_4_54
Type: TC
Location: 56571 - 57551 (-)
Gene ID: HRGMv2_0880_4_55
Type:
Location: 57711 - 58499 (-)
Gene ID: HRGMv2_0880_4_56
Type: pfam
Location: 58748 - 60151 (-)
Gene ID: HRGMv2_0880_4_57
Type: TC
Location: 60287 - 62221 (-)
Gene ID: HRGMv2_0880_4_58
Type: TC
Location: 62456 - 63019 (-)
Gene ID: HRGMv2_0880_4_59
Type: peptidase
Location: 63266 - 64165 (+)
Gene ID: HRGMv2_0880_4_60
Type:
Location: 64213 - 64533 (+)
Gene ID: HRGMv2_0880_4_61
Type: TC
Location: 64655 - 67015 (+)
Gene ID: HRGMv2_0880_4_62
Type: TC
Location: 67139 - 68335 (+)
Gene ID: HRGMv2_0880_4_63
Type: CAZyme
Location: 68489 - 69865 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0880_4_57 vegan > omnivore 1.25591 0.00701

🧭 Explore Read Mapping of CGC

← Back to Cluster List