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Cluster: HRGMv2_0880_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0880_3 HRGMv2_0880_3_104 119013 121208 + 1.I.1.1.3
TC HRGMv2_0880_3 HRGMv2_0880_3_105 121659 122171 + 4.A.1.2.5
pfam HRGMv2_0880_3 HRGMv2_0880_3_106 122178 123044 + PRD | PRD | CAT_RBD
TC HRGMv2_0880_3 HRGMv2_0880_3_107 123144 124760 + 4.A.1.1.3
CAZyme HRGMv2_0880_3 HRGMv2_0880_3_108 124764 126146 + GH4
STP HRGMv2_0880_3 HRGMv2_0880_3_109 126403 128235 + Pyr_redox_2
TC HRGMv2_0880_3 HRGMv2_0880_3_110 128229 130040 + 3.D.1.5.1
pfam HRGMv2_0880_3 HRGMv2_0880_3_111 130043 131101 + NMT1
TC HRGMv2_0880_3 HRGMv2_0880_3_112 131105 132481 + 3.A.1.17.10
Gene ID: HRGMv2_0880_3_104
Type: TC
Location: 119013 - 121208 (+)
Gene ID: HRGMv2_0880_3_105
Type: TC
Location: 121659 - 122171 (+)
Gene ID: HRGMv2_0880_3_106
Type: pfam
Location: 122178 - 123044 (+)
Gene ID: HRGMv2_0880_3_107
Type: TC
Location: 123144 - 124760 (+)
Gene ID: HRGMv2_0880_3_108
Type: CAZyme
Location: 124764 - 126146 (+)
Gene ID: HRGMv2_0880_3_109
Type: STP
Location: 126403 - 128235 (+)
Gene ID: HRGMv2_0880_3_110
Type: TC
Location: 128229 - 130040 (+)
Gene ID: HRGMv2_0880_3_111
Type: pfam
Location: 130043 - 131101 (+)
Gene ID: HRGMv2_0880_3_112
Type: TC
Location: 131105 - 132481 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0880_3_112 vegan > omnivore 1.13696 0.00701

🧭 Explore Read Mapping of CGC

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