Cluster: HRGMv2_0880_CGC6
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0880
- CGC Family ID: CGCFAM_00050
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0880_2 | HRGMv2_0880_2_107 | 121982 | 122701 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_0880_2 | HRGMv2_0880_2_108 | 122702 | 123817 | + | GT4 |
| pfam | HRGMv2_0880_2 | HRGMv2_0880_2_109 | 123836 | 124972 | + | Radical_SAM | SPASM |
| pfam | HRGMv2_0880_2 | HRGMv2_0880_2_110 | 124973 | 126031 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_0880_2 | HRGMv2_0880_2_111 | 126107 | 127129 | + | GT2 |
| CAZyme | HRGMv2_0880_2 | HRGMv2_0880_2_112 | 127126 | 128082 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0880_2 | HRGMv2_0880_2_113 | 128083 | 128886 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0880_2 | HRGMv2_0880_2_114 | 128984 | 130222 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0880_2 | HRGMv2_0880_2_115 | 130277 | 131440 | + | GT2 |
Gene ID: HRGMv2_0880_2_107
Type: TC
Location: 121982 - 122701 (+)
Type: TC
Location: 121982 - 122701 (+)
Gene ID: HRGMv2_0880_2_108
Type: CAZyme
Location: 122702 - 123817 (+)
Type: CAZyme
Location: 122702 - 123817 (+)
Gene ID: HRGMv2_0880_2_109
Type: pfam
Location: 123836 - 124972 (+)
Type: pfam
Location: 123836 - 124972 (+)
Gene ID: HRGMv2_0880_2_110
Type: pfam
Location: 124973 - 126031 (+)
Type: pfam
Location: 124973 - 126031 (+)
Gene ID: HRGMv2_0880_2_111
Type: CAZyme
Location: 126107 - 127129 (+)
Type: CAZyme
Location: 126107 - 127129 (+)
Gene ID: HRGMv2_0880_2_112
Type: CAZyme
Location: 127126 - 128082 (+)
Type: CAZyme
Location: 127126 - 128082 (+)
Gene ID: HRGMv2_0880_2_113
Type:
Location: 128083 - 128886 (+)
Type:
Location: 128083 - 128886 (+)
Gene ID: HRGMv2_0880_2_114
Type:
Location: 128984 - 130222 (+)
Type:
Location: 128984 - 130222 (+)
Gene ID: HRGMv2_0880_2_115
Type: CAZyme
Location: 130277 - 131440 (+)
Type: CAZyme
Location: 130277 - 131440 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0880_2_108 | vegetarian > vegan | 2.89725 | 0.01882 |
| HRGMv2_0880_2_109 | vegetarian > vegan | 1.64731 | 0.01882 |