dbCAN Logo

Cluster: HRGMv2_0880_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0880_12 HRGMv2_0880_12_36 38746 39915 - CE9
STP HRGMv2_0880_12 HRGMv2_0880_12_37 40033 41199 - SIS | SIS
TF HRGMv2_0880_12 HRGMv2_0880_12_38 41314 42045 - GntR
TC HRGMv2_0880_12 HRGMv2_0880_12_39 42230 43312 - 4.A.6.1.4
TC HRGMv2_0880_12 HRGMv2_0880_12_40 43302 44102 - 4.A.6.1.4
TC HRGMv2_0880_12 HRGMv2_0880_12_41 44193 44675 - 4.A.6.1.4
pfam HRGMv2_0880_12 HRGMv2_0880_12_42 44712 44993 - YajC
TC HRGMv2_0880_12 HRGMv2_0880_12_43 44993 45436 - 4.A.6.1.16
Gene ID: HRGMv2_0880_12_36
Type: CAZyme
Location: 38746 - 39915 (-)
Gene ID: HRGMv2_0880_12_37
Type: STP
Location: 40033 - 41199 (-)
Gene ID: HRGMv2_0880_12_38
Type: TF
Location: 41314 - 42045 (-)
Gene ID: HRGMv2_0880_12_39
Type: TC
Location: 42230 - 43312 (-)
Gene ID: HRGMv2_0880_12_40
Type: TC
Location: 43302 - 44102 (-)
Gene ID: HRGMv2_0880_12_41
Type: TC
Location: 44193 - 44675 (-)
Gene ID: HRGMv2_0880_12_42
Type: pfam
Location: 44712 - 44993 (-)
Gene ID: HRGMv2_0880_12_43
Type: TC
Location: 44993 - 45436 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0880_12_42 vegan > omnivore 1.08402 0.00701

🧭 Explore Read Mapping of CGC

← Back to Cluster List