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Cluster: HRGMv2_0879_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0879_2 HRGMv2_0879_2_79 91587 92756 - CE9
STP HRGMv2_0879_2 HRGMv2_0879_2_80 92875 94041 - SIS | SIS
TF HRGMv2_0879_2 HRGMv2_0879_2_81 94156 94887 - GntR
TC HRGMv2_0879_2 HRGMv2_0879_2_82 95073 96155 - 4.A.6.1.4
TC HRGMv2_0879_2 HRGMv2_0879_2_83 96145 96945 - 4.A.6.1.4
TC HRGMv2_0879_2 HRGMv2_0879_2_84 97036 97518 - 4.A.6.1.4
pfam HRGMv2_0879_2 HRGMv2_0879_2_85 97555 97836 - YajC
TC HRGMv2_0879_2 HRGMv2_0879_2_86 97836 98279 - 4.A.6.1.16
Gene ID: HRGMv2_0879_2_79
Type: CAZyme
Location: 91587 - 92756 (-)
Gene ID: HRGMv2_0879_2_80
Type: STP
Location: 92875 - 94041 (-)
Gene ID: HRGMv2_0879_2_81
Type: TF
Location: 94156 - 94887 (-)
Gene ID: HRGMv2_0879_2_82
Type: TC
Location: 95073 - 96155 (-)
Gene ID: HRGMv2_0879_2_83
Type: TC
Location: 96145 - 96945 (-)
Gene ID: HRGMv2_0879_2_84
Type: TC
Location: 97036 - 97518 (-)
Gene ID: HRGMv2_0879_2_85
Type: pfam
Location: 97555 - 97836 (-)
Gene ID: HRGMv2_0879_2_86
Type: TC
Location: 97836 - 98279 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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