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Cluster: HRGMv2_0879_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0879_2 HRGMv2_0879_2_41 48663 49001 - 4.A.3.1.2
TF HRGMv2_0879_2 HRGMv2_0879_2_42 49216 50220 - LacI
TC HRGMv2_0879_2 HRGMv2_0879_2_43 50578 52353 + 4.A.3.1.1
CAZyme HRGMv2_0879_2 HRGMv2_0879_2_44 52420 53859 + GH1
TF HRGMv2_0879_2 HRGMv2_0879_2_45 54127 55164 - LacI
CAZyme HRGMv2_0879_2 HRGMv2_0879_2_46 55506 56948 + GH1
TC HRGMv2_0879_2 HRGMv2_0879_2_47 57125 58885 + 4.A.3.1.1
TF HRGMv2_0879_2 HRGMv2_0879_2_48 59142 60152 - LacI
TC HRGMv2_0879_2 HRGMv2_0879_2_49 60428 62185 + 4.A.3.1.1
CAZyme HRGMv2_0879_2 HRGMv2_0879_2_50 62261 63682 + GH1
pfam HRGMv2_0879_2 HRGMv2_0879_2_51 64052 65284 + Fic
STP HRGMv2_0879_2 HRGMv2_0879_2_52 65338 65661 - DeoRC
TC HRGMv2_0879_2 HRGMv2_0879_2_53 65824 67518 - 4.A.3.1.1
Gene ID: HRGMv2_0879_2_41
Type: TC
Location: 48663 - 49001 (-)
Gene ID: HRGMv2_0879_2_42
Type: TF
Location: 49216 - 50220 (-)
Gene ID: HRGMv2_0879_2_43
Type: TC
Location: 50578 - 52353 (+)
Gene ID: HRGMv2_0879_2_44
Type: CAZyme
Location: 52420 - 53859 (+)
Gene ID: HRGMv2_0879_2_45
Type: TF
Location: 54127 - 55164 (-)
Gene ID: HRGMv2_0879_2_46
Type: CAZyme
Location: 55506 - 56948 (+)
Gene ID: HRGMv2_0879_2_47
Type: TC
Location: 57125 - 58885 (+)
Gene ID: HRGMv2_0879_2_48
Type: TF
Location: 59142 - 60152 (-)
Gene ID: HRGMv2_0879_2_49
Type: TC
Location: 60428 - 62185 (+)
Gene ID: HRGMv2_0879_2_50
Type: CAZyme
Location: 62261 - 63682 (+)
Gene ID: HRGMv2_0879_2_51
Type: pfam
Location: 64052 - 65284 (+)
Gene ID: HRGMv2_0879_2_52
Type: STP
Location: 65338 - 65661 (-)
Gene ID: HRGMv2_0879_2_53
Type: TC
Location: 65824 - 67518 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0879_2_45 vegetarian > omnivore 1.05722 0.02677

🧭 Explore Read Mapping of CGC

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