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Cluster: HRGMv2_0879_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0879_24 HRGMv2_0879_24_10 6880 7674 - 3.A.1.34.1
TC HRGMv2_0879_24 HRGMv2_0879_24_11 7667 8590 - 3.A.1.34.1
TC HRGMv2_0879_24 HRGMv2_0879_24_12 8794 9774 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0879_24 HRGMv2_0879_24_13 9935 10720 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0879_24 HRGMv2_0879_24_14 10979 12382 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0879_24 HRGMv2_0879_24_15 12564 13127 - 4.A.1.2.6
peptidase HRGMv2_0879_24 HRGMv2_0879_24_16 13371 14270 + S09.UPW
TC HRGMv2_0879_24 HRGMv2_0879_24_17 14744 17104 + 9.A.8.1.6
TC HRGMv2_0879_24 HRGMv2_0879_24_18 17420 19084 + 4.A.1.1.3
TF HRGMv2_0879_24 HRGMv2_0879_24_19 19147 19899 - HTH_6
CAZyme HRGMv2_0879_24 HRGMv2_0879_24_20 20075 21448 + GH4
NULL(UNKNOWN) HRGMv2_0879_24 HRGMv2_0879_24_21 21614 22366 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0879_24 HRGMv2_0879_24_22 22542 23738 + 2.A.1.2.18
CAZyme HRGMv2_0879_24 HRGMv2_0879_24_23 23921 25297 + GH13_20
Gene ID: HRGMv2_0879_24_10
Type: TC
Location: 6880 - 7674 (-)
Gene ID: HRGMv2_0879_24_11
Type: TC
Location: 7667 - 8590 (-)
Gene ID: HRGMv2_0879_24_12
Type: TC
Location: 8794 - 9774 (-)
Gene ID: HRGMv2_0879_24_13
Type:
Location: 9935 - 10720 (-)
Gene ID: HRGMv2_0879_24_14
Type: pfam
Location: 10979 - 12382 (-)
Gene ID: HRGMv2_0879_24_15
Type: TC
Location: 12564 - 13127 (-)
Gene ID: HRGMv2_0879_24_16
Type: peptidase
Location: 13371 - 14270 (+)
Gene ID: HRGMv2_0879_24_17
Type: TC
Location: 14744 - 17104 (+)
Gene ID: HRGMv2_0879_24_18
Type: TC
Location: 17420 - 19084 (+)
Gene ID: HRGMv2_0879_24_19
Type: TF
Location: 19147 - 19899 (-)
Gene ID: HRGMv2_0879_24_20
Type: CAZyme
Location: 20075 - 21448 (+)
Gene ID: HRGMv2_0879_24_21
Type:
Location: 21614 - 22366 (+)
Gene ID: HRGMv2_0879_24_22
Type: TC
Location: 22542 - 23738 (+)
Gene ID: HRGMv2_0879_24_23
Type: CAZyme
Location: 23921 - 25297 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0879_24_20 vegan > omnivore 1.35233 0.01057
HRGMv2_0879_24_21 vegan > omnivore 1.56686 0.01057

🧭 Explore Read Mapping of CGC

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