Cluster: HRGMv2_0877_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0877
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0877_4 | HRGMv2_0877_4_3 | 2259 | 3746 | + | 4.A.1.1.7 |
| TF | HRGMv2_0877_4 | HRGMv2_0877_4_4 | 3979 | 4710 | + | GntR |
| CAZyme | HRGMv2_0877_4 | HRGMv2_0877_4_5 | 4854 | 6023 | + | CE9 |
| pfam | HRGMv2_0877_4 | HRGMv2_0877_4_6 | 6056 | 6529 | + | DUF386 |
| CAZyme | HRGMv2_0877_4 | HRGMv2_0877_4_7 | 7015 | 8811 | + | GH35 |
| TC | HRGMv2_0877_4 | HRGMv2_0877_4_8 | 8814 | 9278 | + | 4.A.6.1.18 |
| TC | HRGMv2_0877_4 | HRGMv2_0877_4_9 | 9372 | 10259 | + | 4.A.6.1.18 |
| TC | HRGMv2_0877_4 | HRGMv2_0877_4_10 | 10249 | 11088 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_0877_4 | HRGMv2_0877_4_11 | 11277 | 11900 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0877_4 | HRGMv2_0877_4_12 | 11982 | 12410 | + | 4.A.6.1.8 |
| TF | HRGMv2_0877_4 | HRGMv2_0877_4_13 | 12498 | 13232 | + | GntR |
| STP | HRGMv2_0877_4 | HRGMv2_0877_4_14 | 13344 | 14510 | + | SIS | SIS |
| CAZyme | HRGMv2_0877_4 | HRGMv2_0877_4_15 | 14627 | 15796 | + | CE9 |
Gene ID: HRGMv2_0877_4_3
Type: TC
Location: 2259 - 3746 (+)
Type: TC
Location: 2259 - 3746 (+)
Gene ID: HRGMv2_0877_4_4
Type: TF
Location: 3979 - 4710 (+)
Type: TF
Location: 3979 - 4710 (+)
Gene ID: HRGMv2_0877_4_5
Type: CAZyme
Location: 4854 - 6023 (+)
Type: CAZyme
Location: 4854 - 6023 (+)
Gene ID: HRGMv2_0877_4_6
Type: pfam
Location: 6056 - 6529 (+)
Type: pfam
Location: 6056 - 6529 (+)
Gene ID: HRGMv2_0877_4_7
Type: CAZyme
Location: 7015 - 8811 (+)
Type: CAZyme
Location: 7015 - 8811 (+)
Gene ID: HRGMv2_0877_4_8
Type: TC
Location: 8814 - 9278 (+)
Type: TC
Location: 8814 - 9278 (+)
Gene ID: HRGMv2_0877_4_9
Type: TC
Location: 9372 - 10259 (+)
Type: TC
Location: 9372 - 10259 (+)
Gene ID: HRGMv2_0877_4_10
Type: TC
Location: 10249 - 11088 (+)
Type: TC
Location: 10249 - 11088 (+)
Gene ID: HRGMv2_0877_4_11
Type:
Location: 11277 - 11900 (+)
Type:
Location: 11277 - 11900 (+)
Gene ID: HRGMv2_0877_4_12
Type: TC
Location: 11982 - 12410 (+)
Type: TC
Location: 11982 - 12410 (+)
Gene ID: HRGMv2_0877_4_13
Type: TF
Location: 12498 - 13232 (+)
Type: TF
Location: 12498 - 13232 (+)
Gene ID: HRGMv2_0877_4_14
Type: STP
Location: 13344 - 14510 (+)
Type: STP
Location: 13344 - 14510 (+)
Gene ID: HRGMv2_0877_4_15
Type: CAZyme
Location: 14627 - 15796 (+)
Type: CAZyme
Location: 14627 - 15796 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958435945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0877_4_4 | vegetarian > vegan | 3.35711 | 0.02517 |
| HRGMv2_0877_4_7 | vegetarian > vegan | 2.76649 | 0.02517 |
| HRGMv2_0877_4_8 | vegetarian > vegan | 3.35837 | 0.02517 |
| HRGMv2_0877_4_10 | vegetarian > vegan | 2.49377 | 0.02517 |