Cluster: HRGMv2_0877_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0877
- CGC Family ID: CGCFAM_00049
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0877_14 | HRGMv2_0877_14_43 | 42904 | 43920 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0877_14 | HRGMv2_0877_14_44 | 43917 | 45470 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0877_14 | HRGMv2_0877_14_45 | 45460 | 46497 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_0877_14 | HRGMv2_0877_14_46 | 46565 | 47551 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0877_14 | HRGMv2_0877_14_47 | 47551 | 48738 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0877_14 | HRGMv2_0877_14_48 | 48762 | 49805 | - | GT4 |
| pfam | HRGMv2_0877_14 | HRGMv2_0877_14_49 | 49869 | 50975 | - | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_0877_14 | HRGMv2_0877_14_50 | 50996 | 51748 | - | GT2 |
| TC | HRGMv2_0877_14 | HRGMv2_0877_14_51 | 51749 | 52354 | - | 9.B.18.1.3 |
| STP | HRGMv2_0877_14 | HRGMv2_0877_14_52 | 52441 | 53658 | - | Aminotran_1_2 |
| TC | HRGMv2_0877_14 | HRGMv2_0877_14_53 | 53676 | 55556 | - | 9.B.18.2.1 |
Gene ID: HRGMv2_0877_14_43
Type: CAZyme
Location: 42904 - 43920 (-)
Type: CAZyme
Location: 42904 - 43920 (-)
Gene ID: HRGMv2_0877_14_44
Type:
Location: 43917 - 45470 (-)
Type:
Location: 43917 - 45470 (-)
Gene ID: HRGMv2_0877_14_45
Type: pfam
Location: 45460 - 46497 (-)
Type: pfam
Location: 45460 - 46497 (-)
Gene ID: HRGMv2_0877_14_46
Type: CAZyme
Location: 46565 - 47551 (-)
Type: CAZyme
Location: 46565 - 47551 (-)
Gene ID: HRGMv2_0877_14_47
Type:
Location: 47551 - 48738 (-)
Type:
Location: 47551 - 48738 (-)
Gene ID: HRGMv2_0877_14_48
Type: CAZyme
Location: 48762 - 49805 (-)
Type: CAZyme
Location: 48762 - 49805 (-)
Gene ID: HRGMv2_0877_14_49
Type: pfam
Location: 49869 - 50975 (-)
Type: pfam
Location: 49869 - 50975 (-)
Gene ID: HRGMv2_0877_14_50
Type: CAZyme
Location: 50996 - 51748 (-)
Type: CAZyme
Location: 50996 - 51748 (-)
Gene ID: HRGMv2_0877_14_51
Type: TC
Location: 51749 - 52354 (-)
Type: TC
Location: 51749 - 52354 (-)
Gene ID: HRGMv2_0877_14_52
Type: STP
Location: 52441 - 53658 (-)
Type: STP
Location: 52441 - 53658 (-)
Gene ID: HRGMv2_0877_14_53
Type: TC
Location: 53676 - 55556 (-)
Type: TC
Location: 53676 - 55556 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958435945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.