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Cluster: HRGMv2_0877_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0877_13 HRGMv2_0877_13_47 47514 48914 + GH1
TC HRGMv2_0877_13 HRGMv2_0877_13_48 49035 50378 + 4.A.3.2.9
TC HRGMv2_0877_13 HRGMv2_0877_13_49 50540 50842 + 4.A.3.2.9
TC HRGMv2_0877_13 HRGMv2_0877_13_50 50852 51184 + 4.A.3.2.3
STP HRGMv2_0877_13 HRGMv2_0877_13_51 51426 52379 + Glucokinase
pfam HRGMv2_0877_13 HRGMv2_0877_13_52 52546 53469 + DHH | DHHA2
TC HRGMv2_0877_13 HRGMv2_0877_13_53 53736 55094 + 2.A.33.1.1
Gene ID: HRGMv2_0877_13_47
Type: CAZyme
Location: 47514 - 48914 (+)
Gene ID: HRGMv2_0877_13_48
Type: TC
Location: 49035 - 50378 (+)
Gene ID: HRGMv2_0877_13_49
Type: TC
Location: 50540 - 50842 (+)
Gene ID: HRGMv2_0877_13_50
Type: TC
Location: 50852 - 51184 (+)
Gene ID: HRGMv2_0877_13_51
Type: STP
Location: 51426 - 52379 (+)
Gene ID: HRGMv2_0877_13_52
Type: pfam
Location: 52546 - 53469 (+)
Gene ID: HRGMv2_0877_13_53
Type: TC
Location: 53736 - 55094 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0877_13_49 vegan > omnivore 1.01467 0.01882

🧭 Explore Read Mapping of CGC

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