Cluster: HRGMv2_0876_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0876
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0876_3 | HRGMv2_0876_3_54 | 63246 | 64265 | + | GH109 |
| pfam | HRGMv2_0876_3 | HRGMv2_0876_3_55 | 64396 | 65262 | + | AP_endonuc_2 |
| TC | HRGMv2_0876_3 | HRGMv2_0876_3_56 | 65410 | 66270 | + | 3.A.1.3.15 |
| TC | HRGMv2_0876_3 | HRGMv2_0876_3_57 | 66389 | 67750 | + | 3.A.1.3.16 |
| TC | HRGMv2_0876_3 | HRGMv2_0876_3_58 | 67763 | 68512 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_0876_3_54
Type: CAZyme
Location: 63246 - 64265 (+)
Type: CAZyme
Location: 63246 - 64265 (+)
Gene ID: HRGMv2_0876_3_55
Type: pfam
Location: 64396 - 65262 (+)
Type: pfam
Location: 64396 - 65262 (+)
Gene ID: HRGMv2_0876_3_56
Type: TC
Location: 65410 - 66270 (+)
Type: TC
Location: 65410 - 66270 (+)
Gene ID: HRGMv2_0876_3_57
Type: TC
Location: 66389 - 67750 (+)
Type: TC
Location: 66389 - 67750 (+)
Gene ID: HRGMv2_0876_3_58
Type: TC
Location: 67763 - 68512 (+)
Type: TC
Location: 67763 - 68512 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003487125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.