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Cluster: HRGMv2_0876_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0876_1 HRGMv2_0876_1_181 218108 219121 - 2.A.10.1.4
sulfatase HRGMv2_0876_1 HRGMv2_0876_1_182 219230 219979 - S1_2
TF HRGMv2_0876_1 HRGMv2_0876_1_183 220270 220719 + MarR
TC HRGMv2_0876_1 HRGMv2_0876_1_184 220716 223085 + 3.A.1.135.6
TC HRGMv2_0876_1 HRGMv2_0876_1_185 223085 224941 + 3.A.1.135.6
NULL(UNKNOWN) HRGMv2_0876_1 HRGMv2_0876_1_186 225028 225417 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0876_1 HRGMv2_0876_1_187 225509 225781 - 8.A.8.1.6
CAZyme HRGMv2_0876_1 HRGMv2_0876_1_188 225860 227398 - GH1
TC HRGMv2_0876_1 HRGMv2_0876_1_189 227481 227810 - 4.A.3.2.8
TC HRGMv2_0876_1 HRGMv2_0876_1_190 227901 229214 - 4.A.3.2.8
Gene ID: HRGMv2_0876_1_181
Type: TC
Location: 218108 - 219121 (-)
Gene ID: HRGMv2_0876_1_182
Type: sulfatase
Location: 219230 - 219979 (-)
Gene ID: HRGMv2_0876_1_183
Type: TF
Location: 220270 - 220719 (+)
Gene ID: HRGMv2_0876_1_184
Type: TC
Location: 220716 - 223085 (+)
Gene ID: HRGMv2_0876_1_185
Type: TC
Location: 223085 - 224941 (+)
Gene ID: HRGMv2_0876_1_186
Type:
Location: 225028 - 225417 (-)
Gene ID: HRGMv2_0876_1_187
Type: TC
Location: 225509 - 225781 (-)
Gene ID: HRGMv2_0876_1_188
Type: CAZyme
Location: 225860 - 227398 (-)
Gene ID: HRGMv2_0876_1_189
Type: TC
Location: 227481 - 227810 (-)
Gene ID: HRGMv2_0876_1_190
Type: TC
Location: 227901 - 229214 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0876_1_181 vegan > omnivore 1.31305 0.01144
HRGMv2_0876_1_182 vegan > omnivore 1.10723 0.01144

🧭 Explore Read Mapping of CGC

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