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Cluster: HRGMv2_0876_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0876_10 HRGMv2_0876_10_63 63887 65581 + 4.A.3.1.1
STP HRGMv2_0876_10 HRGMv2_0876_10_64 65744 66085 + DeoRC
pfam HRGMv2_0876_10 HRGMv2_0876_10_65 66123 67355 - Fic
CAZyme HRGMv2_0876_10 HRGMv2_0876_10_66 67717 69138 - GH1
TC HRGMv2_0876_10 HRGMv2_0876_10_67 69214 70992 - 4.A.3.1.1
TF HRGMv2_0876_10 HRGMv2_0876_10_68 71277 72278 + LacI
TC HRGMv2_0876_10 HRGMv2_0876_10_69 72452 74212 - 4.A.3.1.1
CAZyme HRGMv2_0876_10 HRGMv2_0876_10_70 74389 75831 - GH1
TF HRGMv2_0876_10 HRGMv2_0876_10_71 76173 77210 + LacI
CAZyme HRGMv2_0876_10 HRGMv2_0876_10_72 77478 78917 - GH1
TC HRGMv2_0876_10 HRGMv2_0876_10_73 78984 80759 - 4.A.3.1.1
TF HRGMv2_0876_10 HRGMv2_0876_10_74 81087 82121 + LacI
TC HRGMv2_0876_10 HRGMv2_0876_10_75 82336 82674 + 4.A.3.1.2
Gene ID: HRGMv2_0876_10_63
Type: TC
Location: 63887 - 65581 (+)
Gene ID: HRGMv2_0876_10_64
Type: STP
Location: 65744 - 66085 (+)
Gene ID: HRGMv2_0876_10_65
Type: pfam
Location: 66123 - 67355 (-)
Gene ID: HRGMv2_0876_10_66
Type: CAZyme
Location: 67717 - 69138 (-)
Gene ID: HRGMv2_0876_10_67
Type: TC
Location: 69214 - 70992 (-)
Gene ID: HRGMv2_0876_10_68
Type: TF
Location: 71277 - 72278 (+)
Gene ID: HRGMv2_0876_10_69
Type: TC
Location: 72452 - 74212 (-)
Gene ID: HRGMv2_0876_10_70
Type: CAZyme
Location: 74389 - 75831 (-)
Gene ID: HRGMv2_0876_10_71
Type: TF
Location: 76173 - 77210 (+)
Gene ID: HRGMv2_0876_10_72
Type: CAZyme
Location: 77478 - 78917 (-)
Gene ID: HRGMv2_0876_10_73
Type: TC
Location: 78984 - 80759 (-)
Gene ID: HRGMv2_0876_10_74
Type: TF
Location: 81087 - 82121 (+)
Gene ID: HRGMv2_0876_10_75
Type: TC
Location: 82336 - 82674 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0876_10_71 vegetarian > omnivore 1.00281 0.03181

🧭 Explore Read Mapping of CGC

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