Cluster: HRGMv2_0876_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0876
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0876_9 | HRGMv2_0876_9_55 | 71573 | 72790 | - | GT4 |
| pfam | HRGMv2_0876_9 | HRGMv2_0876_9_56 | 72805 | 73569 | - | BcrAD_BadFG |
| pfam | HRGMv2_0876_9 | HRGMv2_0876_9_57 | 73620 | 74783 | - | HGD-D |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_58 | 74861 | 75646 | - | 3.A.1.5.36 |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_59 | 75636 | 76631 | - | 3.A.1.5.37 |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_60 | 76635 | 77465 | - | 3.A.1.5.39 |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_61 | 77462 | 78415 | - | 3.A.1.5.39 |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_62 | 78504 | 80114 | - | 3.A.1.5.11 |
| pfam | HRGMv2_0876_9 | HRGMv2_0876_9_63 | 80299 | 81582 | - | HGD-D |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_64 | 82027 | 83097 | - | 3.A.1.1.3 |
| TC | HRGMv2_0876_9 | HRGMv2_0876_9_65 | 83101 | 84543 | - | 3.A.1.8.1 |
Gene ID: HRGMv2_0876_9_55
Type: CAZyme
Location: 71573 - 72790 (-)
Type: CAZyme
Location: 71573 - 72790 (-)
Gene ID: HRGMv2_0876_9_56
Type: pfam
Location: 72805 - 73569 (-)
Type: pfam
Location: 72805 - 73569 (-)
Gene ID: HRGMv2_0876_9_57
Type: pfam
Location: 73620 - 74783 (-)
Type: pfam
Location: 73620 - 74783 (-)
Gene ID: HRGMv2_0876_9_58
Type: TC
Location: 74861 - 75646 (-)
Type: TC
Location: 74861 - 75646 (-)
Gene ID: HRGMv2_0876_9_59
Type: TC
Location: 75636 - 76631 (-)
Type: TC
Location: 75636 - 76631 (-)
Gene ID: HRGMv2_0876_9_60
Type: TC
Location: 76635 - 77465 (-)
Type: TC
Location: 76635 - 77465 (-)
Gene ID: HRGMv2_0876_9_61
Type: TC
Location: 77462 - 78415 (-)
Type: TC
Location: 77462 - 78415 (-)
Gene ID: HRGMv2_0876_9_62
Type: TC
Location: 78504 - 80114 (-)
Type: TC
Location: 78504 - 80114 (-)
Gene ID: HRGMv2_0876_9_63
Type: pfam
Location: 80299 - 81582 (-)
Type: pfam
Location: 80299 - 81582 (-)
Gene ID: HRGMv2_0876_9_64
Type: TC
Location: 82027 - 83097 (-)
Type: TC
Location: 82027 - 83097 (-)
Gene ID: HRGMv2_0876_9_65
Type: TC
Location: 83101 - 84543 (-)
Type: TC
Location: 83101 - 84543 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003487125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0876_9_55 | vegan > omnivore | 1.52193 | 0.01144 |
| HRGMv2_0876_9_58 | vegan > omnivore | 2.71578 | 0.01144 |
| HRGMv2_0876_9_60 | vegan > omnivore | 2.77293 | 0.01144 |
| HRGMv2_0876_9_60 | vegetarian > omnivore | 1.02310 | 0.03824 |
| HRGMv2_0876_9_61 | vegan > omnivore | 2.59222 | 0.01144 |
| HRGMv2_0876_9_61 | vegetarian > omnivore | 1.00291 | 0.03824 |
| HRGMv2_0876_9_62 | vegan > omnivore | 3.18991 | 0.01144 |