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Cluster: HRGMv2_0874_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0874_35 HRGMv2_0874_35_6 3438 4607 - CE9
STP HRGMv2_0874_35 HRGMv2_0874_35_7 4726 5892 - SIS | SIS
TF HRGMv2_0874_35 HRGMv2_0874_35_8 6007 6738 - GntR
TC HRGMv2_0874_35 HRGMv2_0874_35_9 6924 8006 - 4.A.6.1.4
TC HRGMv2_0874_35 HRGMv2_0874_35_10 7996 8796 - 4.A.6.1.4
TC HRGMv2_0874_35 HRGMv2_0874_35_11 8887 9369 - 4.A.6.1.4
pfam HRGMv2_0874_35 HRGMv2_0874_35_12 9406 9687 - YajC
TC HRGMv2_0874_35 HRGMv2_0874_35_13 9687 10130 - 4.A.6.1.16
Gene ID: HRGMv2_0874_35_6
Type: CAZyme
Location: 3438 - 4607 (-)
Gene ID: HRGMv2_0874_35_7
Type: STP
Location: 4726 - 5892 (-)
Gene ID: HRGMv2_0874_35_8
Type: TF
Location: 6007 - 6738 (-)
Gene ID: HRGMv2_0874_35_9
Type: TC
Location: 6924 - 8006 (-)
Gene ID: HRGMv2_0874_35_10
Type: TC
Location: 7996 - 8796 (-)
Gene ID: HRGMv2_0874_35_11
Type: TC
Location: 8887 - 9369 (-)
Gene ID: HRGMv2_0874_35_12
Type: pfam
Location: 9406 - 9687 (-)
Gene ID: HRGMv2_0874_35_13
Type: TC
Location: 9687 - 10130 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0874_35_12 vegan > omnivore 1.04012 0.00701

🧭 Explore Read Mapping of CGC

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