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Cluster: HRGMv2_0873_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0873_5 HRGMv2_0873_5_28 29090 29884 - 3.A.1.34.1
TC HRGMv2_0873_5 HRGMv2_0873_5_29 29877 30800 - 3.A.1.34.1
TC HRGMv2_0873_5 HRGMv2_0873_5_30 31005 31985 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0873_5 HRGMv2_0873_5_31 32146 32931 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0873_5 HRGMv2_0873_5_32 33181 34584 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0873_5 HRGMv2_0873_5_33 34765 35406 - 4.A.1.2.6
peptidase HRGMv2_0873_5 HRGMv2_0873_5_34 35575 36474 + S09.UPW
NULL(UNKNOWN) HRGMv2_0873_5 HRGMv2_0873_5_35 36522 36842 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0873_5 HRGMv2_0873_5_36 36964 39324 + 9.A.8.1.6
TC HRGMv2_0873_5 HRGMv2_0873_5_37 39449 40645 + 2.A.1.2.18
CAZyme HRGMv2_0873_5 HRGMv2_0873_5_38 40799 42175 + GH13_20
Gene ID: HRGMv2_0873_5_28
Type: TC
Location: 29090 - 29884 (-)
Gene ID: HRGMv2_0873_5_29
Type: TC
Location: 29877 - 30800 (-)
Gene ID: HRGMv2_0873_5_30
Type: TC
Location: 31005 - 31985 (-)
Gene ID: HRGMv2_0873_5_31
Type:
Location: 32146 - 32931 (-)
Gene ID: HRGMv2_0873_5_32
Type: pfam
Location: 33181 - 34584 (-)
Gene ID: HRGMv2_0873_5_33
Type: TC
Location: 34765 - 35406 (-)
Gene ID: HRGMv2_0873_5_34
Type: peptidase
Location: 35575 - 36474 (+)
Gene ID: HRGMv2_0873_5_35
Type:
Location: 36522 - 36842 (+)
Gene ID: HRGMv2_0873_5_36
Type: TC
Location: 36964 - 39324 (+)
Gene ID: HRGMv2_0873_5_37
Type: TC
Location: 39449 - 40645 (+)
Gene ID: HRGMv2_0873_5_38
Type: CAZyme
Location: 40799 - 42175 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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