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Cluster: HRGMv2_0873_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0873_1 HRGMv2_0873_1_150 179063 180232 - CE9
STP HRGMv2_0873_1 HRGMv2_0873_1_151 180351 181517 - SIS | SIS
TF HRGMv2_0873_1 HRGMv2_0873_1_152 181632 182363 - GntR
TC HRGMv2_0873_1 HRGMv2_0873_1_153 182549 183631 - 4.A.6.1.4
TC HRGMv2_0873_1 HRGMv2_0873_1_154 183621 184421 - 4.A.6.1.4
TC HRGMv2_0873_1 HRGMv2_0873_1_155 184512 184994 - 4.A.6.1.4
pfam HRGMv2_0873_1 HRGMv2_0873_1_156 185031 185312 - YajC
TC HRGMv2_0873_1 HRGMv2_0873_1_157 185312 185755 - 4.A.6.1.16
Gene ID: HRGMv2_0873_1_150
Type: CAZyme
Location: 179063 - 180232 (-)
Gene ID: HRGMv2_0873_1_151
Type: STP
Location: 180351 - 181517 (-)
Gene ID: HRGMv2_0873_1_152
Type: TF
Location: 181632 - 182363 (-)
Gene ID: HRGMv2_0873_1_153
Type: TC
Location: 182549 - 183631 (-)
Gene ID: HRGMv2_0873_1_154
Type: TC
Location: 183621 - 184421 (-)
Gene ID: HRGMv2_0873_1_155
Type: TC
Location: 184512 - 184994 (-)
Gene ID: HRGMv2_0873_1_156
Type: pfam
Location: 185031 - 185312 (-)
Gene ID: HRGMv2_0873_1_157
Type: TC
Location: 185312 - 185755 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0873_1_156 vegan > omnivore 1.02181 0.00455

🧭 Explore Read Mapping of CGC

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