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Cluster: HRGMv2_0873_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0873_11 HRGMv2_0873_11_21 23026 23952 - CE7
TC HRGMv2_0873_11 HRGMv2_0873_11_22 24084 24911 - 3.A.1.5.27
TC HRGMv2_0873_11 HRGMv2_0873_11_23 24912 26927 - 3.A.1.5.25
TC HRGMv2_0873_11 HRGMv2_0873_11_24 26931 27887 - 3.A.1.5.38
TC HRGMv2_0873_11 HRGMv2_0873_11_25 28045 29658 - 3.A.1.5.27
pfam HRGMv2_0873_11 HRGMv2_0873_11_26 30024 31964 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_0873_11 HRGMv2_0873_11_27 31971 33653 - 2.A.66.4.4
Gene ID: HRGMv2_0873_11_21
Type: CAZyme
Location: 23026 - 23952 (-)
Gene ID: HRGMv2_0873_11_22
Type: TC
Location: 24084 - 24911 (-)
Gene ID: HRGMv2_0873_11_23
Type: TC
Location: 24912 - 26927 (-)
Gene ID: HRGMv2_0873_11_24
Type: TC
Location: 26931 - 27887 (-)
Gene ID: HRGMv2_0873_11_25
Type: TC
Location: 28045 - 29658 (-)
Gene ID: HRGMv2_0873_11_26
Type: pfam
Location: 30024 - 31964 (-)
Gene ID: HRGMv2_0873_11_27
Type: TC
Location: 31971 - 33653 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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