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Cluster: HRGMv2_0872_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0872_1 HRGMv2_0872_1_80 96056 96850 - 3.A.1.34.1
TC HRGMv2_0872_1 HRGMv2_0872_1_81 96843 97766 - 3.A.1.34.1
TC HRGMv2_0872_1 HRGMv2_0872_1_82 97971 98951 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0872_1 HRGMv2_0872_1_83 99112 99894 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0872_1 HRGMv2_0872_1_84 100153 101556 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0872_1 HRGMv2_0872_1_85 101738 102301 - 4.A.1.2.6
peptidase HRGMv2_0872_1 HRGMv2_0872_1_86 102545 103447 + S09.UPW
TC HRGMv2_0872_1 HRGMv2_0872_1_87 103783 106143 + 9.A.8.1.6
TC HRGMv2_0872_1 HRGMv2_0872_1_88 106458 108122 + 4.A.1.1.3
TF HRGMv2_0872_1 HRGMv2_0872_1_89 108185 108937 - HTH_6
CAZyme HRGMv2_0872_1 HRGMv2_0872_1_90 109113 110486 + GH4
NULL(UNKNOWN) HRGMv2_0872_1 HRGMv2_0872_1_91 110652 111404 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0872_1 HRGMv2_0872_1_92 111580 112776 + 2.A.1.2.18
CAZyme HRGMv2_0872_1 HRGMv2_0872_1_93 112930 114306 + GH13_20
Gene ID: HRGMv2_0872_1_80
Type: TC
Location: 96056 - 96850 (-)
Gene ID: HRGMv2_0872_1_81
Type: TC
Location: 96843 - 97766 (-)
Gene ID: HRGMv2_0872_1_82
Type: TC
Location: 97971 - 98951 (-)
Gene ID: HRGMv2_0872_1_83
Type:
Location: 99112 - 99894 (-)
Gene ID: HRGMv2_0872_1_84
Type: pfam
Location: 100153 - 101556 (-)
Gene ID: HRGMv2_0872_1_85
Type: TC
Location: 101738 - 102301 (-)
Gene ID: HRGMv2_0872_1_86
Type: peptidase
Location: 102545 - 103447 (+)
Gene ID: HRGMv2_0872_1_87
Type: TC
Location: 103783 - 106143 (+)
Gene ID: HRGMv2_0872_1_88
Type: TC
Location: 106458 - 108122 (+)
Gene ID: HRGMv2_0872_1_89
Type: TF
Location: 108185 - 108937 (-)
Gene ID: HRGMv2_0872_1_90
Type: CAZyme
Location: 109113 - 110486 (+)
Gene ID: HRGMv2_0872_1_91
Type:
Location: 110652 - 111404 (+)
Gene ID: HRGMv2_0872_1_92
Type: TC
Location: 111580 - 112776 (+)
Gene ID: HRGMv2_0872_1_93
Type: CAZyme
Location: 112930 - 114306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0872_1_88 vegan > omnivore 1.15268 0.00701
HRGMv2_0872_1_90 vegan > omnivore 1.80164 0.00701
HRGMv2_0872_1_91 vegan > omnivore 2.00256 0.00701

🧭 Explore Read Mapping of CGC

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