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Cluster: HRGMv2_0872_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0872_13 HRGMv2_0872_13_22 22795 23964 - CE9
STP HRGMv2_0872_13 HRGMv2_0872_13_23 24082 25248 - SIS | SIS
TF HRGMv2_0872_13 HRGMv2_0872_13_24 25363 26094 - GntR
TC HRGMv2_0872_13 HRGMv2_0872_13_25 26280 27362 - 4.A.6.1.4
TC HRGMv2_0872_13 HRGMv2_0872_13_26 27352 28152 - 4.A.6.1.4
TC HRGMv2_0872_13 HRGMv2_0872_13_27 28243 28725 - 4.A.6.1.4
pfam HRGMv2_0872_13 HRGMv2_0872_13_28 28762 29043 - YajC
TC HRGMv2_0872_13 HRGMv2_0872_13_29 29043 29486 - 4.A.6.1.16
Gene ID: HRGMv2_0872_13_22
Type: CAZyme
Location: 22795 - 23964 (-)
Gene ID: HRGMv2_0872_13_23
Type: STP
Location: 24082 - 25248 (-)
Gene ID: HRGMv2_0872_13_24
Type: TF
Location: 25363 - 26094 (-)
Gene ID: HRGMv2_0872_13_25
Type: TC
Location: 26280 - 27362 (-)
Gene ID: HRGMv2_0872_13_26
Type: TC
Location: 27352 - 28152 (-)
Gene ID: HRGMv2_0872_13_27
Type: TC
Location: 28243 - 28725 (-)
Gene ID: HRGMv2_0872_13_28
Type: pfam
Location: 28762 - 29043 (-)
Gene ID: HRGMv2_0872_13_29
Type: TC
Location: 29043 - 29486 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0872_13_28 vegan > omnivore 1.12398 0.00701

🧭 Explore Read Mapping of CGC

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