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Cluster: HRGMv2_0871_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0871_1 HRGMv2_0871_1_168 197296 198465 - CE9
STP HRGMv2_0871_1 HRGMv2_0871_1_169 198585 199751 - SIS | SIS
TF HRGMv2_0871_1 HRGMv2_0871_1_170 199866 200597 - GntR
TC HRGMv2_0871_1 HRGMv2_0871_1_171 200782 201864 - 4.A.6.1.4
TC HRGMv2_0871_1 HRGMv2_0871_1_172 201854 202654 - 4.A.6.1.4
TC HRGMv2_0871_1 HRGMv2_0871_1_173 202745 203227 - 4.A.6.1.4
pfam HRGMv2_0871_1 HRGMv2_0871_1_174 203264 203545 - YajC
TC HRGMv2_0871_1 HRGMv2_0871_1_175 203545 203988 - 4.A.6.1.16
Gene ID: HRGMv2_0871_1_168
Type: CAZyme
Location: 197296 - 198465 (-)
Gene ID: HRGMv2_0871_1_169
Type: STP
Location: 198585 - 199751 (-)
Gene ID: HRGMv2_0871_1_170
Type: TF
Location: 199866 - 200597 (-)
Gene ID: HRGMv2_0871_1_171
Type: TC
Location: 200782 - 201864 (-)
Gene ID: HRGMv2_0871_1_172
Type: TC
Location: 201854 - 202654 (-)
Gene ID: HRGMv2_0871_1_173
Type: TC
Location: 202745 - 203227 (-)
Gene ID: HRGMv2_0871_1_174
Type: pfam
Location: 203264 - 203545 (-)
Gene ID: HRGMv2_0871_1_175
Type: TC
Location: 203545 - 203988 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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