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Cluster: HRGMv2_0870_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0870_5 HRGMv2_0870_5_18 17682 18608 - CE7
TC HRGMv2_0870_5 HRGMv2_0870_5_19 18740 19567 - 3.A.1.5.27
TC HRGMv2_0870_5 HRGMv2_0870_5_20 19568 21583 - 3.A.1.5.25
TC HRGMv2_0870_5 HRGMv2_0870_5_21 21587 22543 - 3.A.1.5.38
TC HRGMv2_0870_5 HRGMv2_0870_5_22 22701 24314 - 3.A.1.5.27
pfam HRGMv2_0870_5 HRGMv2_0870_5_23 24680 26620 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_0870_5 HRGMv2_0870_5_24 26627 28930 - 2.A.66.4.4
Gene ID: HRGMv2_0870_5_18
Type: CAZyme
Location: 17682 - 18608 (-)
Gene ID: HRGMv2_0870_5_19
Type: TC
Location: 18740 - 19567 (-)
Gene ID: HRGMv2_0870_5_20
Type: TC
Location: 19568 - 21583 (-)
Gene ID: HRGMv2_0870_5_21
Type: TC
Location: 21587 - 22543 (-)
Gene ID: HRGMv2_0870_5_22
Type: TC
Location: 22701 - 24314 (-)
Gene ID: HRGMv2_0870_5_23
Type: pfam
Location: 24680 - 26620 (-)
Gene ID: HRGMv2_0870_5_24
Type: TC
Location: 26627 - 28930 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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