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Cluster: HRGMv2_0870_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0870_4 HRGMv2_0870_4_5 3723 4892 - CE9
STP HRGMv2_0870_4 HRGMv2_0870_4_6 5010 6176 - SIS | SIS
TF HRGMv2_0870_4 HRGMv2_0870_4_7 6291 7022 - GntR
TC HRGMv2_0870_4 HRGMv2_0870_4_8 7208 8290 - 4.A.6.1.4
TC HRGMv2_0870_4 HRGMv2_0870_4_9 8280 9080 - 4.A.6.1.4
TC HRGMv2_0870_4 HRGMv2_0870_4_10 9171 9653 - 4.A.6.1.4
pfam HRGMv2_0870_4 HRGMv2_0870_4_11 9690 9971 - YajC
TC HRGMv2_0870_4 HRGMv2_0870_4_12 9971 10414 - 4.A.6.1.16
Gene ID: HRGMv2_0870_4_5
Type: CAZyme
Location: 3723 - 4892 (-)
Gene ID: HRGMv2_0870_4_6
Type: STP
Location: 5010 - 6176 (-)
Gene ID: HRGMv2_0870_4_7
Type: TF
Location: 6291 - 7022 (-)
Gene ID: HRGMv2_0870_4_8
Type: TC
Location: 7208 - 8290 (-)
Gene ID: HRGMv2_0870_4_9
Type: TC
Location: 8280 - 9080 (-)
Gene ID: HRGMv2_0870_4_10
Type: TC
Location: 9171 - 9653 (-)
Gene ID: HRGMv2_0870_4_11
Type: pfam
Location: 9690 - 9971 (-)
Gene ID: HRGMv2_0870_4_12
Type: TC
Location: 9971 - 10414 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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