Cluster: HRGMv2_0868_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0868
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0868_2 | HRGMv2_0868_2_31 | 40089 | 40415 | + | 4.A.3.2.7 |
| TC | HRGMv2_0868_2 | HRGMv2_0868_2_32 | 40462 | 40755 | + | 4.A.3.2.6 |
| TC | HRGMv2_0868_2 | HRGMv2_0868_2_33 | 40765 | 42114 | + | 4.A.3.2.6 |
| CAZyme | HRGMv2_0868_2 | HRGMv2_0868_2_34 | 42116 | 43570 | + | GH1 |
Gene ID: HRGMv2_0868_2_31
Type: TC
Location: 40089 - 40415 (+)
Type: TC
Location: 40089 - 40415 (+)
Gene ID: HRGMv2_0868_2_32
Type: TC
Location: 40462 - 40755 (+)
Type: TC
Location: 40462 - 40755 (+)
Gene ID: HRGMv2_0868_2_33
Type: TC
Location: 40765 - 42114 (+)
Type: TC
Location: 40765 - 42114 (+)
Gene ID: HRGMv2_0868_2_34
Type: CAZyme
Location: 42116 - 43570 (+)
Type: CAZyme
Location: 42116 - 43570 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0868_2_31 | vegetarian > vegan | 1.55654 | 0.02171 |
| HRGMv2_0868_2_32 | vegetarian > vegan | 2.32671 | 0.02171 |
| HRGMv2_0868_2_33 | vegetarian > vegan | 2.05057 | 0.02171 |
| HRGMv2_0868_2_34 | vegetarian > vegan | 2.35689 | 0.02171 |