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Cluster: HRGMv2_0868_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0868_13 HRGMv2_0868_13_14 11839 13533 + 4.A.3.1.1
STP HRGMv2_0868_13 HRGMv2_0868_13_15 13696 14037 + DeoRC
pfam HRGMv2_0868_13 HRGMv2_0868_13_16 14075 15307 - Fic
CAZyme HRGMv2_0868_13 HRGMv2_0868_13_17 15675 17096 - GH1
TC HRGMv2_0868_13 HRGMv2_0868_13_18 17173 18951 - 4.A.3.1.1
TF HRGMv2_0868_13 HRGMv2_0868_13_19 19236 20237 + LacI
CAZyme HRGMv2_0868_13 HRGMv2_0868_13_20 20582 22021 - GH1
TC HRGMv2_0868_13 HRGMv2_0868_13_21 22088 23863 - 4.A.3.1.1
TF HRGMv2_0868_13 HRGMv2_0868_13_22 24191 25225 + LacI
TC HRGMv2_0868_13 HRGMv2_0868_13_23 25440 25778 + 4.A.3.1.2
Gene ID: HRGMv2_0868_13_14
Type: TC
Location: 11839 - 13533 (+)
Gene ID: HRGMv2_0868_13_15
Type: STP
Location: 13696 - 14037 (+)
Gene ID: HRGMv2_0868_13_16
Type: pfam
Location: 14075 - 15307 (-)
Gene ID: HRGMv2_0868_13_17
Type: CAZyme
Location: 15675 - 17096 (-)
Gene ID: HRGMv2_0868_13_18
Type: TC
Location: 17173 - 18951 (-)
Gene ID: HRGMv2_0868_13_19
Type: TF
Location: 19236 - 20237 (+)
Gene ID: HRGMv2_0868_13_20
Type: CAZyme
Location: 20582 - 22021 (-)
Gene ID: HRGMv2_0868_13_21
Type: TC
Location: 22088 - 23863 (-)
Gene ID: HRGMv2_0868_13_22
Type: TF
Location: 24191 - 25225 (+)
Gene ID: HRGMv2_0868_13_23
Type: TC
Location: 25440 - 25778 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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