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Cluster: HRGMv2_0868_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0868_12 HRGMv2_0868_12_45 49155 49598 + 4.A.6.1.16
pfam HRGMv2_0868_12 HRGMv2_0868_12_46 49598 49879 + YajC
TC HRGMv2_0868_12 HRGMv2_0868_12_47 49916 50398 + 4.A.6.1.4
TC HRGMv2_0868_12 HRGMv2_0868_12_48 50489 51289 + 4.A.6.1.4
TC HRGMv2_0868_12 HRGMv2_0868_12_49 51279 52361 + 4.A.6.1.4
TF HRGMv2_0868_12 HRGMv2_0868_12_50 52546 53277 + GntR
STP HRGMv2_0868_12 HRGMv2_0868_12_51 53392 54558 + SIS | SIS
CAZyme HRGMv2_0868_12 HRGMv2_0868_12_52 54676 55845 + CE9
Gene ID: HRGMv2_0868_12_45
Type: TC
Location: 49155 - 49598 (+)
Gene ID: HRGMv2_0868_12_46
Type: pfam
Location: 49598 - 49879 (+)
Gene ID: HRGMv2_0868_12_47
Type: TC
Location: 49916 - 50398 (+)
Gene ID: HRGMv2_0868_12_48
Type: TC
Location: 50489 - 51289 (+)
Gene ID: HRGMv2_0868_12_49
Type: TC
Location: 51279 - 52361 (+)
Gene ID: HRGMv2_0868_12_50
Type: TF
Location: 52546 - 53277 (+)
Gene ID: HRGMv2_0868_12_51
Type: STP
Location: 53392 - 54558 (+)
Gene ID: HRGMv2_0868_12_52
Type: CAZyme
Location: 54676 - 55845 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0868_12_46 vegan > omnivore 1.04957 0.00701

🧭 Explore Read Mapping of CGC

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