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Cluster: HRGMv2_0866_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0866_15 HRGMv2_0866_15_5 4590 6284 + 4.A.3.1.1
STP HRGMv2_0866_15 HRGMv2_0866_15_6 6447 6842 + DeoRC
pfam HRGMv2_0866_15 HRGMv2_0866_15_7 6948 8180 - Fic
CAZyme HRGMv2_0866_15 HRGMv2_0866_15_8 8548 9969 - GH1
TC HRGMv2_0866_15 HRGMv2_0866_15_9 10045 11832 - 4.A.3.1.1
TF HRGMv2_0866_15 HRGMv2_0866_15_10 12108 13118 + LacI
TC HRGMv2_0866_15 HRGMv2_0866_15_11 13456 15216 - 4.A.3.1.1
CAZyme HRGMv2_0866_15 HRGMv2_0866_15_12 15393 16835 - GH1
TF HRGMv2_0866_15 HRGMv2_0866_15_13 17177 18214 + LacI
CAZyme HRGMv2_0866_15 HRGMv2_0866_15_14 18482 19921 - GH1
TC HRGMv2_0866_15 HRGMv2_0866_15_15 19988 21763 - 4.A.3.1.1
TF HRGMv2_0866_15 HRGMv2_0866_15_16 22121 23125 + LacI
TC HRGMv2_0866_15 HRGMv2_0866_15_17 23340 23678 + 4.A.3.1.2
Gene ID: HRGMv2_0866_15_5
Type: TC
Location: 4590 - 6284 (+)
Gene ID: HRGMv2_0866_15_6
Type: STP
Location: 6447 - 6842 (+)
Gene ID: HRGMv2_0866_15_7
Type: pfam
Location: 6948 - 8180 (-)
Gene ID: HRGMv2_0866_15_8
Type: CAZyme
Location: 8548 - 9969 (-)
Gene ID: HRGMv2_0866_15_9
Type: TC
Location: 10045 - 11832 (-)
Gene ID: HRGMv2_0866_15_10
Type: TF
Location: 12108 - 13118 (+)
Gene ID: HRGMv2_0866_15_11
Type: TC
Location: 13456 - 15216 (-)
Gene ID: HRGMv2_0866_15_12
Type: CAZyme
Location: 15393 - 16835 (-)
Gene ID: HRGMv2_0866_15_13
Type: TF
Location: 17177 - 18214 (+)
Gene ID: HRGMv2_0866_15_14
Type: CAZyme
Location: 18482 - 19921 (-)
Gene ID: HRGMv2_0866_15_15
Type: TC
Location: 19988 - 21763 (-)
Gene ID: HRGMv2_0866_15_16
Type: TF
Location: 22121 - 23125 (+)
Gene ID: HRGMv2_0866_15_17
Type: TC
Location: 23340 - 23678 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0866_15_13 vegetarian > omnivore 1.03935 0.02677

🧭 Explore Read Mapping of CGC

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