Cluster: HRGMv2_0864_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0864
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0864_2 | HRGMv2_0864_2_312 | 400920 | 407333 | - | GH31_18 |
| TF | HRGMv2_0864_2 | HRGMv2_0864_2_313 | 407844 | 408284 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_0864_2 | HRGMv2_0864_2_314 | 408389 | 408715 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0864_2 | HRGMv2_0864_2_315 | 408911 | 409738 | - | 4.A.6.1.6 |
| TC | HRGMv2_0864_2 | HRGMv2_0864_2_316 | 409738 | 410595 | - | 4.A.6.1.1 |
| TC | HRGMv2_0864_2 | HRGMv2_0864_2_317 | 410668 | 411156 | - | 4.A.6.1.9 |
Gene ID: HRGMv2_0864_2_312
Type: CAZyme
Location: 400920 - 407333 (-)
Type: CAZyme
Location: 400920 - 407333 (-)
Gene ID: HRGMv2_0864_2_313
Type: TF
Location: 407844 - 408284 (-)
Type: TF
Location: 407844 - 408284 (-)
Gene ID: HRGMv2_0864_2_314
Type:
Location: 408389 - 408715 (-)
Type:
Location: 408389 - 408715 (-)
Gene ID: HRGMv2_0864_2_315
Type: TC
Location: 408911 - 409738 (-)
Type: TC
Location: 408911 - 409738 (-)
Gene ID: HRGMv2_0864_2_316
Type: TC
Location: 409738 - 410595 (-)
Type: TC
Location: 409738 - 410595 (-)
Gene ID: HRGMv2_0864_2_317
Type: TC
Location: 410668 - 411156 (-)
Type: TC
Location: 410668 - 411156 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp025757745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0864_2_312 | vegetarian > vegan | 2.03284 | 0.01195 |