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Cluster: HRGMv2_0864_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0864_1 HRGMv2_0864_1_343 403596 405434 + 9.B.18.2.1
STP HRGMv2_0864_1 HRGMv2_0864_1_344 405450 406703 + Aminotran_1_2
TC HRGMv2_0864_1 HRGMv2_0864_1_345 406696 407415 + 9.B.18.1.3
CAZyme HRGMv2_0864_1 HRGMv2_0864_1_346 407412 408203 + GT2
pfam HRGMv2_0864_1 HRGMv2_0864_1_347 408229 409311 + Glycos_transf_1 | Glyco_trans_1_4
CAZyme HRGMv2_0864_1 HRGMv2_0864_1_348 409277 410413 + GT4
pfam HRGMv2_0864_1 HRGMv2_0864_1_349 410406 411671 + Wzy_C
pfam HRGMv2_0864_1 HRGMv2_0864_1_350 411672 413063 + ATPgrasp_TupA | ATPgrasp_TupA
CAZyme HRGMv2_0864_1 HRGMv2_0864_1_351 413060 414103 + GT2
Gene ID: HRGMv2_0864_1_343
Type: TC
Location: 403596 - 405434 (+)
Gene ID: HRGMv2_0864_1_344
Type: STP
Location: 405450 - 406703 (+)
Gene ID: HRGMv2_0864_1_345
Type: TC
Location: 406696 - 407415 (+)
Gene ID: HRGMv2_0864_1_346
Type: CAZyme
Location: 407412 - 408203 (+)
Gene ID: HRGMv2_0864_1_347
Type: pfam
Location: 408229 - 409311 (+)
Gene ID: HRGMv2_0864_1_348
Type: CAZyme
Location: 409277 - 410413 (+)
Gene ID: HRGMv2_0864_1_349
Type: pfam
Location: 410406 - 411671 (+)
Gene ID: HRGMv2_0864_1_350
Type: pfam
Location: 411672 - 413063 (+)
Gene ID: HRGMv2_0864_1_351
Type: CAZyme
Location: 413060 - 414103 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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