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Cluster: HRGMv2_0864_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0864_4 HRGMv2_0864_4_15 16982 18151 - CE9
STP HRGMv2_0864_4 HRGMv2_0864_4_16 18269 19435 - SIS | SIS
TF HRGMv2_0864_4 HRGMv2_0864_4_17 19550 20281 - GntR
TC HRGMv2_0864_4 HRGMv2_0864_4_18 20467 21549 - 4.A.6.1.4
TC HRGMv2_0864_4 HRGMv2_0864_4_19 21539 22339 - 4.A.6.1.4
TC HRGMv2_0864_4 HRGMv2_0864_4_20 22430 22912 - 4.A.6.1.4
pfam HRGMv2_0864_4 HRGMv2_0864_4_21 22949 23230 - YajC
TC HRGMv2_0864_4 HRGMv2_0864_4_22 23230 23673 - 4.A.6.1.16
Gene ID: HRGMv2_0864_4_15
Type: CAZyme
Location: 16982 - 18151 (-)
Gene ID: HRGMv2_0864_4_16
Type: STP
Location: 18269 - 19435 (-)
Gene ID: HRGMv2_0864_4_17
Type: TF
Location: 19550 - 20281 (-)
Gene ID: HRGMv2_0864_4_18
Type: TC
Location: 20467 - 21549 (-)
Gene ID: HRGMv2_0864_4_19
Type: TC
Location: 21539 - 22339 (-)
Gene ID: HRGMv2_0864_4_20
Type: TC
Location: 22430 - 22912 (-)
Gene ID: HRGMv2_0864_4_21
Type: pfam
Location: 22949 - 23230 (-)
Gene ID: HRGMv2_0864_4_22
Type: TC
Location: 23230 - 23673 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0864_4_21 vegan > omnivore 1.03309 0.00181

🧭 Explore Read Mapping of CGC

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