Cluster: HRGMv2_0863_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0863
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0863_1 | HRGMv2_0863_1_350 | 399548 | 400021 | + | 4.A.6.1.18 |
| TC | HRGMv2_0863_1 | HRGMv2_0863_1_351 | 400031 | 400816 | + | 4.A.6.1.13 |
| TC | HRGMv2_0863_1 | HRGMv2_0863_1_352 | 400819 | 401652 | + | 4.A.6.1.13 |
| pfam | HRGMv2_0863_1 | HRGMv2_0863_1_353 | 401679 | 402077 | + | EIIA-man |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_354 | 402090 | 403214 | + | GH172 |
Gene ID: HRGMv2_0863_1_350
Type: TC
Location: 399548 - 400021 (+)
Type: TC
Location: 399548 - 400021 (+)
Gene ID: HRGMv2_0863_1_351
Type: TC
Location: 400031 - 400816 (+)
Type: TC
Location: 400031 - 400816 (+)
Gene ID: HRGMv2_0863_1_352
Type: TC
Location: 400819 - 401652 (+)
Type: TC
Location: 400819 - 401652 (+)
Gene ID: HRGMv2_0863_1_353
Type: pfam
Location: 401679 - 402077 (+)
Type: pfam
Location: 401679 - 402077 (+)
Gene ID: HRGMv2_0863_1_354
Type: CAZyme
Location: 402090 - 403214 (+)
Type: CAZyme
Location: 402090 - 403214 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958413765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0863_1_350 | vegan > omnivore | 1.10272 | 0.00701 |
| HRGMv2_0863_1_354 | vegan > omnivore | 1.02854 | 0.00701 |