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Cluster: HRGMv2_0863_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0863_1 HRGMv2_0863_1_129 148729 149172 + 4.A.6.1.16
pfam HRGMv2_0863_1 HRGMv2_0863_1_130 149172 149453 + YajC
TC HRGMv2_0863_1 HRGMv2_0863_1_131 149490 149972 + 4.A.6.1.4
TC HRGMv2_0863_1 HRGMv2_0863_1_132 150063 150863 + 4.A.6.1.4
TC HRGMv2_0863_1 HRGMv2_0863_1_133 150853 151935 + 4.A.6.1.4
TF HRGMv2_0863_1 HRGMv2_0863_1_134 152121 152852 + GntR
STP HRGMv2_0863_1 HRGMv2_0863_1_135 152967 154133 + SIS | SIS
CAZyme HRGMv2_0863_1 HRGMv2_0863_1_136 154252 155421 + CE9
Gene ID: HRGMv2_0863_1_129
Type: TC
Location: 148729 - 149172 (+)
Gene ID: HRGMv2_0863_1_130
Type: pfam
Location: 149172 - 149453 (+)
Gene ID: HRGMv2_0863_1_131
Type: TC
Location: 149490 - 149972 (+)
Gene ID: HRGMv2_0863_1_132
Type: TC
Location: 150063 - 150863 (+)
Gene ID: HRGMv2_0863_1_133
Type: TC
Location: 150853 - 151935 (+)
Gene ID: HRGMv2_0863_1_134
Type: TF
Location: 152121 - 152852 (+)
Gene ID: HRGMv2_0863_1_135
Type: STP
Location: 152967 - 154133 (+)
Gene ID: HRGMv2_0863_1_136
Type: CAZyme
Location: 154252 - 155421 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0863_1_130 vegan > omnivore 1.12931 0.00701

🧭 Explore Read Mapping of CGC

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