Cluster: HRGMv2_0863_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0863
- CGC Family ID: CGCFAM_00398
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_612 | 714109 | 715128 | - | GT2 |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_613 | 715385 | 716488 | + | GT2 |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_614 | 716495 | 717535 | + | GT2 |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_615 | 717610 | 718728 | + | GT2 |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_616 | 718741 | 719808 | + | GT2 |
| pfam | HRGMv2_0863_1 | HRGMv2_0863_1_617 | 720467 | 721564 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| pfam | HRGMv2_0863_1 | HRGMv2_0863_1_618 | 721645 | 723672 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| CAZyme | HRGMv2_0863_1 | HRGMv2_0863_1_619 | 723941 | 726502 | + | GH25 |
| TC | HRGMv2_0863_1 | HRGMv2_0863_1_620 | 726564 | 727505 | - | 2.A.7.18.1 |
Gene ID: HRGMv2_0863_1_612
Type: CAZyme
Location: 714109 - 715128 (-)
Type: CAZyme
Location: 714109 - 715128 (-)
Gene ID: HRGMv2_0863_1_613
Type: CAZyme
Location: 715385 - 716488 (+)
Type: CAZyme
Location: 715385 - 716488 (+)
Gene ID: HRGMv2_0863_1_614
Type: CAZyme
Location: 716495 - 717535 (+)
Type: CAZyme
Location: 716495 - 717535 (+)
Gene ID: HRGMv2_0863_1_615
Type: CAZyme
Location: 717610 - 718728 (+)
Type: CAZyme
Location: 717610 - 718728 (+)
Gene ID: HRGMv2_0863_1_616
Type: CAZyme
Location: 718741 - 719808 (+)
Type: CAZyme
Location: 718741 - 719808 (+)
Gene ID: HRGMv2_0863_1_617
Type: pfam
Location: 720467 - 721564 (+)
Type: pfam
Location: 720467 - 721564 (+)
Gene ID: HRGMv2_0863_1_618
Type: pfam
Location: 721645 - 723672 (+)
Type: pfam
Location: 721645 - 723672 (+)
Gene ID: HRGMv2_0863_1_619
Type: CAZyme
Location: 723941 - 726502 (+)
Type: CAZyme
Location: 723941 - 726502 (+)
Gene ID: HRGMv2_0863_1_620
Type: TC
Location: 726564 - 727505 (-)
Type: TC
Location: 726564 - 727505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958413765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.