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Cluster: HRGMv2_0863_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0863_1 HRGMv2_0863_1_5 7905 10373 - 4.A.1.1.8
TF HRGMv2_0863_1 HRGMv2_0863_1_6 10583 11302 + GntR
TC HRGMv2_0863_1 HRGMv2_0863_1_7 11609 12925 + 3.A.1.1.45
TC HRGMv2_0863_1 HRGMv2_0863_1_8 13013 13867 + 3.A.1.1.45
TC HRGMv2_0863_1 HRGMv2_0863_1_9 13867 14706 + 3.A.1.1.45
TC HRGMv2_0863_1 HRGMv2_0863_1_10 14775 15974 + 3.A.1.1.22
CAZyme HRGMv2_0863_1 HRGMv2_0863_1_11 16431 18698 - GT35
CAZyme HRGMv2_0863_1 HRGMv2_0863_1_12 18827 20332 - GH77
Gene ID: HRGMv2_0863_1_5
Type: TC
Location: 7905 - 10373 (-)
Gene ID: HRGMv2_0863_1_6
Type: TF
Location: 10583 - 11302 (+)
Gene ID: HRGMv2_0863_1_7
Type: TC
Location: 11609 - 12925 (+)
Gene ID: HRGMv2_0863_1_8
Type: TC
Location: 13013 - 13867 (+)
Gene ID: HRGMv2_0863_1_9
Type: TC
Location: 13867 - 14706 (+)
Gene ID: HRGMv2_0863_1_10
Type: TC
Location: 14775 - 15974 (+)
Gene ID: HRGMv2_0863_1_11
Type: CAZyme
Location: 16431 - 18698 (-)
Gene ID: HRGMv2_0863_1_12
Type: CAZyme
Location: 18827 - 20332 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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