Cluster: HRGMv2_0862_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0862
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0862_3 | HRGMv2_0862_3_55 | 65230 | 65718 | + | 4.A.6.1.9 |
| TC | HRGMv2_0862_3 | HRGMv2_0862_3_56 | 65791 | 66648 | + | 4.A.6.1.1 |
| TC | HRGMv2_0862_3 | HRGMv2_0862_3_57 | 66648 | 67475 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_0862_3 | HRGMv2_0862_3_58 | 67671 | 67997 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0862_3 | HRGMv2_0862_3_59 | 68102 | 68542 | + | MarR |
| CAZyme | HRGMv2_0862_3 | HRGMv2_0862_3_60 | 69053 | 75466 | + | GH31_18 |
Gene ID: HRGMv2_0862_3_55
Type: TC
Location: 65230 - 65718 (+)
Type: TC
Location: 65230 - 65718 (+)
Gene ID: HRGMv2_0862_3_56
Type: TC
Location: 65791 - 66648 (+)
Type: TC
Location: 65791 - 66648 (+)
Gene ID: HRGMv2_0862_3_57
Type: TC
Location: 66648 - 67475 (+)
Type: TC
Location: 66648 - 67475 (+)
Gene ID: HRGMv2_0862_3_58
Type:
Location: 67671 - 67997 (+)
Type:
Location: 67671 - 67997 (+)
Gene ID: HRGMv2_0862_3_59
Type: TF
Location: 68102 - 68542 (+)
Type: TF
Location: 68102 - 68542 (+)
Gene ID: HRGMv2_0862_3_60
Type: CAZyme
Location: 69053 - 75466 (+)
Type: CAZyme
Location: 69053 - 75466 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003459245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0862_3_60 | vegetarian > omnivore | 1.31925 | 0.04495 |
| HRGMv2_0862_3_60 | vegetarian > vegan | 2.20578 | 0.00782 |