Cluster: HRGMv2_0862_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0862
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0862_19 | HRGMv2_0862_19_65 | 78254 | 81262 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0862_19 | HRGMv2_0862_19_66 | 81266 | 81721 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0862_19 | HRGMv2_0862_19_67 | 81876 | 83339 | + | 2.A.3.7.4 |
| STP | HRGMv2_0862_19 | HRGMv2_0862_19_68 | 83761 | 84009 | + | PTS-HPr |
| STP | HRGMv2_0862_19 | HRGMv2_0862_19_69 | 84198 | 84440 | + | FeoA |
| TC | HRGMv2_0862_19 | HRGMv2_0862_19_70 | 84480 | 84701 | + | 9.A.8.1.6 |
| TC | HRGMv2_0862_19 | HRGMv2_0862_19_71 | 84825 | 87152 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_0862_19_65
Type: CAZyme
Location: 78254 - 81262 (+)
Type: CAZyme
Location: 78254 - 81262 (+)
Gene ID: HRGMv2_0862_19_66
Type:
Location: 81266 - 81721 (+)
Type:
Location: 81266 - 81721 (+)
Gene ID: HRGMv2_0862_19_67
Type: TC
Location: 81876 - 83339 (+)
Type: TC
Location: 81876 - 83339 (+)
Gene ID: HRGMv2_0862_19_68
Type: STP
Location: 83761 - 84009 (+)
Type: STP
Location: 83761 - 84009 (+)
Gene ID: HRGMv2_0862_19_69
Type: STP
Location: 84198 - 84440 (+)
Type: STP
Location: 84198 - 84440 (+)
Gene ID: HRGMv2_0862_19_70
Type: TC
Location: 84480 - 84701 (+)
Type: TC
Location: 84480 - 84701 (+)
Gene ID: HRGMv2_0862_19_71
Type: TC
Location: 84825 - 87152 (+)
Type: TC
Location: 84825 - 87152 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003459245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.