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Cluster: HRGMv2_0862_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0862_1 HRGMv2_0862_1_9 8781 10382 + GH77
CAZyme HRGMv2_0862_1 HRGMv2_0862_1_10 10511 12778 + GT35
TC HRGMv2_0862_1 HRGMv2_0862_1_11 13234 14433 - 3.A.1.1.22
TC HRGMv2_0862_1 HRGMv2_0862_1_12 14502 15341 - 3.A.1.1.45
TC HRGMv2_0862_1 HRGMv2_0862_1_13 15341 16195 - 3.A.1.1.45
TC HRGMv2_0862_1 HRGMv2_0862_1_14 16283 17599 - 3.A.1.1.45
TF HRGMv2_0862_1 HRGMv2_0862_1_15 17906 18625 - GntR
TC HRGMv2_0862_1 HRGMv2_0862_1_16 18835 21303 + 4.A.1.1.8
Gene ID: HRGMv2_0862_1_9
Type: CAZyme
Location: 8781 - 10382 (+)
Gene ID: HRGMv2_0862_1_10
Type: CAZyme
Location: 10511 - 12778 (+)
Gene ID: HRGMv2_0862_1_11
Type: TC
Location: 13234 - 14433 (-)
Gene ID: HRGMv2_0862_1_12
Type: TC
Location: 14502 - 15341 (-)
Gene ID: HRGMv2_0862_1_13
Type: TC
Location: 15341 - 16195 (-)
Gene ID: HRGMv2_0862_1_14
Type: TC
Location: 16283 - 17599 (-)
Gene ID: HRGMv2_0862_1_15
Type: TF
Location: 17906 - 18625 (-)
Gene ID: HRGMv2_0862_1_16
Type: TC
Location: 18835 - 21303 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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