Cluster: HRGMv2_0843_CGC30
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0843
- CGC Family ID: CGCFAM_02102
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0843_234 | HRGMv2_0843_234_1 | 273 | 2183 | + | 9.B.18.2.1 |
| pfam | HRGMv2_0843_234 | HRGMv2_0843_234_2 | 2183 | 3364 | + | DegT_DnrJ_EryC1 |
| TC | HRGMv2_0843_234 | HRGMv2_0843_234_3 | 3459 | 4055 | + | 9.B.18.1.2 |
| pfam | HRGMv2_0843_234 | HRGMv2_0843_234_4 | 4163 | 4897 | + | Wzz |
| TC | HRGMv2_0843_234 | HRGMv2_0843_234_5 | 4848 | 5552 | + | 8.A.3.1.2 |
| pfam | HRGMv2_0843_234 | HRGMv2_0843_234_6 | 5577 | 6551 | + | ATP-grasp_3 | ATPgrasp_Ter | PylC-like_N |
| pfam | HRGMv2_0843_234 | HRGMv2_0843_234_7 | 6552 | 7289 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_0843_234 | HRGMv2_0843_234_8 | 7252 | 8415 | + | GT4 |
| CAZyme | HRGMv2_0843_234 | HRGMv2_0843_234_9 | 8427 | 9488 | + | GT2 |
| CAZyme | HRGMv2_0843_234 | HRGMv2_0843_234_10 | 9510 | 10493 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0843_234 | HRGMv2_0843_234_11 | 10495 | 11823 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0843_234 | HRGMv2_0843_234_12 | 11807 | 12769 | + | GT2 |
Gene ID: HRGMv2_0843_234_1
Type: TC
Location: 273 - 2183 (+)
Type: TC
Location: 273 - 2183 (+)
Gene ID: HRGMv2_0843_234_2
Type: pfam
Location: 2183 - 3364 (+)
Type: pfam
Location: 2183 - 3364 (+)
Gene ID: HRGMv2_0843_234_3
Type: TC
Location: 3459 - 4055 (+)
Type: TC
Location: 3459 - 4055 (+)
Gene ID: HRGMv2_0843_234_4
Type: pfam
Location: 4163 - 4897 (+)
Type: pfam
Location: 4163 - 4897 (+)
Gene ID: HRGMv2_0843_234_5
Type: TC
Location: 4848 - 5552 (+)
Type: TC
Location: 4848 - 5552 (+)
Gene ID: HRGMv2_0843_234_6
Type: pfam
Location: 5577 - 6551 (+)
Type: pfam
Location: 5577 - 6551 (+)
Gene ID: HRGMv2_0843_234_7
Type: pfam
Location: 6552 - 7289 (+)
Type: pfam
Location: 6552 - 7289 (+)
Gene ID: HRGMv2_0843_234_8
Type: CAZyme
Location: 7252 - 8415 (+)
Type: CAZyme
Location: 7252 - 8415 (+)
Gene ID: HRGMv2_0843_234_9
Type: CAZyme
Location: 8427 - 9488 (+)
Type: CAZyme
Location: 8427 - 9488 (+)
Gene ID: HRGMv2_0843_234_10
Type: CAZyme
Location: 9510 - 10493 (+)
Type: CAZyme
Location: 9510 - 10493 (+)
Gene ID: HRGMv2_0843_234_11
Type:
Location: 10495 - 11823 (+)
Type:
Location: 10495 - 11823 (+)
Gene ID: HRGMv2_0843_234_12
Type: CAZyme
Location: 11807 - 12769 (+)
Type: CAZyme
Location: 11807 - 12769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp934754925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.