Cluster: HRGMv2_0843_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0843
- CGC Family ID: CGCFAM_00334
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0843_27 | HRGMv2_0843_27_5 | 3059 | 3754 | + | 4.B.1.1.2 |
| pfam | HRGMv2_0843_27 | HRGMv2_0843_27_6 | 4241 | 5215 | + | LytR_cpsA_psr |
| CAZyme | HRGMv2_0843_27 | HRGMv2_0843_27_7 | 5275 | 8295 | - | GH2 |
| TF | HRGMv2_0843_27 | HRGMv2_0843_27_8 | 8503 | 9339 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0843_27 | HRGMv2_0843_27_9 | 9407 | 10786 | - | 2.A.2.3.3 |
Gene ID: HRGMv2_0843_27_5
Type: TC
Location: 3059 - 3754 (+)
Type: TC
Location: 3059 - 3754 (+)
Gene ID: HRGMv2_0843_27_6
Type: pfam
Location: 4241 - 5215 (+)
Type: pfam
Location: 4241 - 5215 (+)
Gene ID: HRGMv2_0843_27_7
Type: CAZyme
Location: 5275 - 8295 (-)
Type: CAZyme
Location: 5275 - 8295 (-)
Gene ID: HRGMv2_0843_27_8
Type: TF
Location: 8503 - 9339 (+)
Type: TF
Location: 8503 - 9339 (+)
Gene ID: HRGMv2_0843_27_9
Type: TC
Location: 9407 - 10786 (-)
Type: TC
Location: 9407 - 10786 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp934754925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.