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Cluster: HRGMv2_0831_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0831_18 HRGMv2_0831_18_11 9849 10988 - CE9
STP HRGMv2_0831_18 HRGMv2_0831_18_12 11181 12359 + SIS | SIS
TC HRGMv2_0831_18 HRGMv2_0831_18_13 12404 12835 + 4.A.6.1.14
pfam HRGMv2_0831_18 HRGMv2_0831_18_14 12837 13115 + YajC
TF HRGMv2_0831_18 HRGMv2_0831_18_15 13292 14461 - HTH_AraC | HTH_AraC
TC HRGMv2_0831_18 HRGMv2_0831_18_16 14746 15222 + 4.A.6.1.4
TC HRGMv2_0831_18 HRGMv2_0831_18_17 15250 16062 + 4.A.6.1.4
TC HRGMv2_0831_18 HRGMv2_0831_18_18 16046 16894 + 4.A.6.1.4
pfam HRGMv2_0831_18 HRGMv2_0831_18_19 17218 18582 + DUF4317
pfam HRGMv2_0831_18 HRGMv2_0831_18_20 18635 18985 + Thioredoxin
TC HRGMv2_0831_18 HRGMv2_0831_18_21 19137 21578 - 2.A.16.2.2
Gene ID: HRGMv2_0831_18_11
Type: CAZyme
Location: 9849 - 10988 (-)
Gene ID: HRGMv2_0831_18_12
Type: STP
Location: 11181 - 12359 (+)
Gene ID: HRGMv2_0831_18_13
Type: TC
Location: 12404 - 12835 (+)
Gene ID: HRGMv2_0831_18_14
Type: pfam
Location: 12837 - 13115 (+)
Gene ID: HRGMv2_0831_18_15
Type: TF
Location: 13292 - 14461 (-)
Gene ID: HRGMv2_0831_18_16
Type: TC
Location: 14746 - 15222 (+)
Gene ID: HRGMv2_0831_18_17
Type: TC
Location: 15250 - 16062 (+)
Gene ID: HRGMv2_0831_18_18
Type: TC
Location: 16046 - 16894 (+)
Gene ID: HRGMv2_0831_18_19
Type: pfam
Location: 17218 - 18582 (+)
Gene ID: HRGMv2_0831_18_20
Type: pfam
Location: 18635 - 18985 (+)
Gene ID: HRGMv2_0831_18_21
Type: TC
Location: 19137 - 21578 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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