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Cluster: HRGMv2_0823_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0823_23 HRGMv2_0823_23_13 12007 13002 + GH25
pfam HRGMv2_0823_23 HRGMv2_0823_23_14 13161 14666 - Rotamase | Rotamase_3
TF HRGMv2_0823_23 HRGMv2_0823_23_15 14926 15369 + MarR
TC HRGMv2_0823_23 HRGMv2_0823_23_16 15366 17108 + 3.A.1.135.7
TC HRGMv2_0823_23 HRGMv2_0823_23_17 17090 18856 + 3.A.1.135.5
TC HRGMv2_0823_23 HRGMv2_0823_23_18 19179 21050 + 3.A.3.6.16
TF HRGMv2_0823_23 HRGMv2_0823_23_19 21229 21999 + HTH_3
pfam HRGMv2_0823_23 HRGMv2_0823_23_20 22101 22925 - GDPD
TC HRGMv2_0823_23 HRGMv2_0823_23_21 23002 23859 - 3.A.1.1.39
TC HRGMv2_0823_23 HRGMv2_0823_23_22 23871 24800 - 3.A.1.1.11
TC HRGMv2_0823_23 HRGMv2_0823_23_23 24793 25878 - 3.A.1.1.5
Gene ID: HRGMv2_0823_23_13
Type: CAZyme
Location: 12007 - 13002 (+)
Gene ID: HRGMv2_0823_23_14
Type: pfam
Location: 13161 - 14666 (-)
Gene ID: HRGMv2_0823_23_15
Type: TF
Location: 14926 - 15369 (+)
Gene ID: HRGMv2_0823_23_16
Type: TC
Location: 15366 - 17108 (+)
Gene ID: HRGMv2_0823_23_17
Type: TC
Location: 17090 - 18856 (+)
Gene ID: HRGMv2_0823_23_18
Type: TC
Location: 19179 - 21050 (+)
Gene ID: HRGMv2_0823_23_19
Type: TF
Location: 21229 - 21999 (+)
Gene ID: HRGMv2_0823_23_20
Type: pfam
Location: 22101 - 22925 (-)
Gene ID: HRGMv2_0823_23_21
Type: TC
Location: 23002 - 23859 (-)
Gene ID: HRGMv2_0823_23_22
Type: TC
Location: 23871 - 24800 (-)
Gene ID: HRGMv2_0823_23_23
Type: TC
Location: 24793 - 25878 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Christensenellales
→
Family
Aristaeellaceae
→
Genus
Faecivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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