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Cluster: HRGMv2_0812_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0812_6 HRGMv2_0812_6_4 2745 5084 + GH95
pfam HRGMv2_0812_6 HRGMv2_0812_6_5 5112 5732 + PRK | AAA_18
pfam HRGMv2_0812_6 HRGMv2_0812_6_6 5780 6652 - RrnaAD
TC HRGMv2_0812_6 HRGMv2_0812_6_7 6672 7307 - 3.A.2.2.2
TC HRGMv2_0812_6 HRGMv2_0812_6_8 7310 8686 - 3.A.2.2.2
TC HRGMv2_0812_6 HRGMv2_0812_6_9 8688 10451 - 3.A.2.2.2
TC HRGMv2_0812_6 HRGMv2_0812_6_10 10456 10779 - 3.A.2.2.2
pfam HRGMv2_0812_6 HRGMv2_0812_6_11 10793 11713 - vATP-synt_AC39
pfam HRGMv2_0812_6 HRGMv2_0812_6_12 11738 12331 - vATP-synt_E
TC HRGMv2_0812_6 HRGMv2_0812_6_13 12366 12848 - 3.A.2.2.2
TC HRGMv2_0812_6 HRGMv2_0812_6_14 12895 14808 - 3.A.2.2.2
Gene ID: HRGMv2_0812_6_4
Type: CAZyme
Location: 2745 - 5084 (+)
Gene ID: HRGMv2_0812_6_5
Type: pfam
Location: 5112 - 5732 (+)
Gene ID: HRGMv2_0812_6_6
Type: pfam
Location: 5780 - 6652 (-)
Gene ID: HRGMv2_0812_6_7
Type: TC
Location: 6672 - 7307 (-)
Gene ID: HRGMv2_0812_6_8
Type: TC
Location: 7310 - 8686 (-)
Gene ID: HRGMv2_0812_6_9
Type: TC
Location: 8688 - 10451 (-)
Gene ID: HRGMv2_0812_6_10
Type: TC
Location: 10456 - 10779 (-)
Gene ID: HRGMv2_0812_6_11
Type: pfam
Location: 10793 - 11713 (-)
Gene ID: HRGMv2_0812_6_12
Type: pfam
Location: 11738 - 12331 (-)
Gene ID: HRGMv2_0812_6_13
Type: TC
Location: 12366 - 12848 (-)
Gene ID: HRGMv2_0812_6_14
Type: TC
Location: 12895 - 14808 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0812_6_8 vegetarian > vegan 1.13853 0.00038

🧭 Explore Read Mapping of CGC

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