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Cluster: HRGMv2_0812_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0812_38 HRGMv2_0812_38_8 6223 6867 - 1.A.16.5.1
STP HRGMv2_0812_38 HRGMv2_0812_38_9 6857 7414 - SIS
TF HRGMv2_0812_38 HRGMv2_0812_38_10 7479 8393 - HTH_AraC | HTH_AraC
TC HRGMv2_0812_38 HRGMv2_0812_38_11 8516 9484 - 3.A.1.5.13
TC HRGMv2_0812_38 HRGMv2_0812_38_12 9485 10456 - 3.A.1.5.13
TC HRGMv2_0812_38 HRGMv2_0812_38_13 10459 11301 - 3.A.1.5.30
TC HRGMv2_0812_38 HRGMv2_0812_38_14 11318 12316 - 3.A.1.5.13
TC HRGMv2_0812_38 HRGMv2_0812_38_15 12455 14329 - 3.A.1.5.20
CAZyme HRGMv2_0812_38 HRGMv2_0812_38_16 14637 17126 + GH38
Gene ID: HRGMv2_0812_38_8
Type: TC
Location: 6223 - 6867 (-)
Gene ID: HRGMv2_0812_38_9
Type: STP
Location: 6857 - 7414 (-)
Gene ID: HRGMv2_0812_38_10
Type: TF
Location: 7479 - 8393 (-)
Gene ID: HRGMv2_0812_38_11
Type: TC
Location: 8516 - 9484 (-)
Gene ID: HRGMv2_0812_38_12
Type: TC
Location: 9485 - 10456 (-)
Gene ID: HRGMv2_0812_38_13
Type: TC
Location: 10459 - 11301 (-)
Gene ID: HRGMv2_0812_38_14
Type: TC
Location: 11318 - 12316 (-)
Gene ID: HRGMv2_0812_38_15
Type: TC
Location: 12455 - 14329 (-)
Gene ID: HRGMv2_0812_38_16
Type: CAZyme
Location: 14637 - 17126 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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