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Cluster: HRGMv2_0811_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0811_35 HRGMv2_0811_35_1 249 1343 - GH172
NULL(UNKNOWN) HRGMv2_0811_35 HRGMv2_0811_35_2 1347 2096 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0811_35 HRGMv2_0811_35_3 2099 3079 - 3.A.1.5.13
TC HRGMv2_0811_35 HRGMv2_0811_35_4 3095 4069 - 3.A.1.5.13
TC HRGMv2_0811_35 HRGMv2_0811_35_5 4073 4933 - 3.A.1.5.30
TC HRGMv2_0811_35 HRGMv2_0811_35_6 4953 5948 - 3.A.1.5.13
TC HRGMv2_0811_35 HRGMv2_0811_35_7 6034 7917 - 3.A.1.5.13
CAZyme HRGMv2_0811_35 HRGMv2_0811_35_8 8341 9408 + GH172
Gene ID: HRGMv2_0811_35_1
Type: CAZyme
Location: 249 - 1343 (-)
Gene ID: HRGMv2_0811_35_2
Type:
Location: 1347 - 2096 (-)
Gene ID: HRGMv2_0811_35_3
Type: TC
Location: 2099 - 3079 (-)
Gene ID: HRGMv2_0811_35_4
Type: TC
Location: 3095 - 4069 (-)
Gene ID: HRGMv2_0811_35_5
Type: TC
Location: 4073 - 4933 (-)
Gene ID: HRGMv2_0811_35_6
Type: TC
Location: 4953 - 5948 (-)
Gene ID: HRGMv2_0811_35_7
Type: TC
Location: 6034 - 7917 (-)
Gene ID: HRGMv2_0811_35_8
Type: CAZyme
Location: 8341 - 9408 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0811_35_4 vegan > omnivore 1.58296 0.00566

🧭 Explore Read Mapping of CGC

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