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Cluster: HRGMv2_0811_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0811_11 HRGMv2_0811_11_18 16074 18020 + GH127
pfam HRGMv2_0811_11 HRGMv2_0811_11_19 18070 18654 - Flavodoxin_2 | FMN_red
pfam HRGMv2_0811_11 HRGMv2_0811_11_20 18714 19427 + PNP_UDP_1
TC HRGMv2_0811_11 HRGMv2_0811_11_21 19470 20456 + 3.A.1.2.17
pfam HRGMv2_0811_11 HRGMv2_0811_11_22 20558 21682 + Radical_SAM
pfam HRGMv2_0811_11 HRGMv2_0811_11_23 21679 22371 + Hydrolase | Hydrolase_like | HAD_2
TC HRGMv2_0811_11 HRGMv2_0811_11_24 22386 23915 + 3.A.1.2.12
TC HRGMv2_0811_11 HRGMv2_0811_11_25 23912 25027 + 3.A.1.2.12
TC HRGMv2_0811_11 HRGMv2_0811_11_26 25024 25965 + 3.A.1.2.10
NULL(UNKNOWN) HRGMv2_0811_11 HRGMv2_0811_11_27 26016 26408 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0811_11 HRGMv2_0811_11_28 26398 27027 + Radical_SAM | Fer4_12
TC HRGMv2_0811_11 HRGMv2_0811_11_29 27226 27717 + 2.A.88.9.2
Gene ID: HRGMv2_0811_11_18
Type: CAZyme
Location: 16074 - 18020 (+)
Gene ID: HRGMv2_0811_11_19
Type: pfam
Location: 18070 - 18654 (-)
Gene ID: HRGMv2_0811_11_20
Type: pfam
Location: 18714 - 19427 (+)
Gene ID: HRGMv2_0811_11_21
Type: TC
Location: 19470 - 20456 (+)
Gene ID: HRGMv2_0811_11_22
Type: pfam
Location: 20558 - 21682 (+)
Gene ID: HRGMv2_0811_11_23
Type: pfam
Location: 21679 - 22371 (+)
Gene ID: HRGMv2_0811_11_24
Type: TC
Location: 22386 - 23915 (+)
Gene ID: HRGMv2_0811_11_25
Type: TC
Location: 23912 - 25027 (+)
Gene ID: HRGMv2_0811_11_26
Type: TC
Location: 25024 - 25965 (+)
Gene ID: HRGMv2_0811_11_27
Type:
Location: 26016 - 26408 (+)
Gene ID: HRGMv2_0811_11_28
Type: pfam
Location: 26398 - 27027 (+)
Gene ID: HRGMv2_0811_11_29
Type: TC
Location: 27226 - 27717 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0811_11_19 vegan > omnivore 1.96299 0.00566
HRGMv2_0811_11_22 vegan > omnivore 1.30991 0.00566
HRGMv2_0811_11_23 vegetarian > omnivore 1.16036 0.04695

🧭 Explore Read Mapping of CGC

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