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Cluster: HRGMv2_0811_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0811_9 HRGMv2_0811_9_21 22588 23958 + 3.A.1.1.7
TC HRGMv2_0811_9 HRGMv2_0811_9_22 23977 24870 + 3.A.1.1.36
CAZyme HRGMv2_0811_9 HRGMv2_0811_9_23 24924 28094 + GH2
TF HRGMv2_0811_9 HRGMv2_0811_9_24 28175 29071 - HTH_AraC
TC HRGMv2_0811_9 HRGMv2_0811_9_25 29353 30279 + 3.A.1.1.10
TC HRGMv2_0811_9 HRGMv2_0811_9_26 30292 31185 + 3.A.1.1.10
TC HRGMv2_0811_9 HRGMv2_0811_9_27 31214 32782 + 3.A.1.1.10
CAZyme HRGMv2_0811_9 HRGMv2_0811_9_28 32846 34945 + GH78
sulfatase HRGMv2_0811_9 HRGMv2_0811_9_29 35103 36299 + S1_8
TC HRGMv2_0811_9 HRGMv2_0811_9_30 36469 37608 - 2.A.45.2.6
Gene ID: HRGMv2_0811_9_21
Type: TC
Location: 22588 - 23958 (+)
Gene ID: HRGMv2_0811_9_22
Type: TC
Location: 23977 - 24870 (+)
Gene ID: HRGMv2_0811_9_23
Type: CAZyme
Location: 24924 - 28094 (+)
Gene ID: HRGMv2_0811_9_24
Type: TF
Location: 28175 - 29071 (-)
Gene ID: HRGMv2_0811_9_25
Type: TC
Location: 29353 - 30279 (+)
Gene ID: HRGMv2_0811_9_26
Type: TC
Location: 30292 - 31185 (+)
Gene ID: HRGMv2_0811_9_27
Type: TC
Location: 31214 - 32782 (+)
Gene ID: HRGMv2_0811_9_28
Type: CAZyme
Location: 32846 - 34945 (+)
Gene ID: HRGMv2_0811_9_29
Type: sulfatase
Location: 35103 - 36299 (+)
Gene ID: HRGMv2_0811_9_30
Type: TC
Location: 36469 - 37608 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0811_9_29 vegan > omnivore 1.80920 0.00566

🧭 Explore Read Mapping of CGC

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